Managing Post-Harvest Rots in Vegetables

Author: Chris Galbraith, Ohio State University Extension/Michigan State University Extension

This article was originally posted on Michigan State University Extension News.

Photo courtesy of MSU Plant and Pest Diagnostics.

Post-harvest rots occurring in vegetable crops can deal a brutal blow both financially and in terms of morale. All the investment and hard work of growing produce is lost if the crop spoils before it can be sold. Fortunately, many of the factors influencing prevalence of post-harvest rots are well-known and there are actions growers can take during the growing season, at-harvest, and post-harvest to reduce losses from premature decay.

What causes a rot?

Once vegetable crops are harvested, they are cut off from their source of nutrients and water. However, the produce continues to respire, using up its energy reserves and releasing water during metabolism. Cellular breakdown occurs as the produce spends its energy/moisture savings without any means of replenishment. As the produce degrades in quality, it becomes more susceptible to colonization by rot-causing pathogens.

There are many different microbes that bring about premature decay if they are able to infect vegetable crops during the different stages of growth and storage. These organisms may be latent pathogens, which can remain quiescent upon entering the crop and begin colonization of host plant tissue during storage (eg. Colletotrichum). Pathogens may also begin colonization immediately after infection, in which case spoilage occurs rapidly. Many rot-causing microbes are considered weak pathogens (eg. different bacterial soft rots), which cannot penetrate healthy plant tissue but instead require wound sites (nicks, scrapes, bruises) to enter and begin colonization. Table 1 lists common post-harvest pathogens for various vegetable crops. Many of these pathogens not only occur in storage but can also cause disease during the growing season.

Table 1. Common Post-Harvest Pathogens of Vegetable Storage Crops
Vegetable Post-Harvest Pathogens Symptoms
Pumpkins/Hard Squash Fusarium Rot (Fusarium spp.) · Tan, corky lesions

· White mold

Sclerotium Rot (Sclerotinia sclerotiorum) · White, fluffy mold

· Hard, black pellets (sclerotia)

Cottony Leak (Pythium spp.) · Brownish water-soaked lesions

· White, cottony mold

Anthracnose (Colletotrichum spp.) · Round, tan, black lesions

· Water-soaked tissue around lesions

Black Rot (Didymella bryoniae) · Water-soaked lesions

· Small black spots

Carrots Gray Mold (Botrytis cinerea) · Gray velvety mold
Watery Rot (Sclerotinia minor) · White fluffy mold

· Hard, black pellets (sclerotia)

Bacterial Soft Rot (various spp.) · Sunken, water-soaked spots

· Seepage from affected area

Potatoes Bacterial Soft Rot (various spp.) · Sunken, water-soaked spots

· Seepage from affected area

Dry Rot (Fusarium spp.) · Sunken, brown/black areas of decay

· White mold may be present

Pink Rot (Phytophthora erythroseptica) · Brown, dry sunken lesions

· Brown internal rot

Pythium Leak (Pythium spp.) · Brownish water-soaked lesions

· White, cottony mold

Onions Bacterial Soft Rot (various spp.) · Sunken, water-soaked spots

· Seepage from affected area

Black Mold (Aspergillus niger) · Dark mold growth

· Shriveling of bulb

Blue Mold (Penicillium spp.) · Soft, watery lesions

· Bluish-green mold growth

Basal Rot (Fusarium spp.) · Red-brown rot at basal end
Neck Rot (Botrytis spp.) · Grey, velvety mold
Cabbage Bacterial Soft Rots (various spp.) · Sunken, water-soaked spots

· Seepage from affected area

Watery Soft Rot (Sclerotinia spp.) · White fluffy mold

· Hard, black pellets (sclerotia)

Gray Mold (Botrytis cinerea) · Grey, velvety mold
Alternaria Leaf Spot (Alternaria brassicola) · Small, brown lesions that turn black

· Lesions are circular and spongy

The disease triangle is a useful framework. Spoilage occurs if the pathogen encounters a susceptible host in conditions that are favorable for infection. Post-harvest spoilage occurs more frequently in warm, wet and humid conditions. High temperatures encourage pathogen activity and increase the rates of produce respiration/ripening. Excess moisture on produce encourages pathogen activity and entry into plant tissue. Similarly, high relative humidity supports free moisture accumulation on vegetable crops in storage. Controlling these factors mitigates risk of premature spoilage and increases the shelf life of vegetable crops.

The disease triangle is a useful framework – spoilage occurs if the pathogen encounters a susceptible host in conditions that are favorable for infection.

Best management practices

Steps can be taken throughout production and storage to minimize losses from post-harvest rots. During the growing season, preventing fruit from coming into contact with the ground using plastic or organic mulch keeps produce cleaner and reduces opportunities for infection. Mulch also helps to reduce soil splash during irrigation or rainfall events, further limiting pathogens from being moved onto susceptible tissue.

Minimizing damage to produce throughout the season reduces wound sites and therefore pathogen entry points. This means gentle handling of vegetable crops at harvest and reducing the number of times produce is touched to minimize accidental skin breaks or bruises. Protecting vegetables from insects, wildlife, and environmental damage (hail, sunscald, wind) also reduces wound sites. Culling produce that is already damaged can reduce spread of spoilage in storage bins. Harvesting at proper maturity also helps optimize shelf-life.

Keeping vegetables cool can go a long way toward preventing premature spoilage. Harvesting during the coolest part of the day and removing the field heat from vegetables immediately after harvest is key. There are different pre-cooling methods available to rapidly bring down the temperature of produce prior to storage, including room-cooling, forced-air cooling, hydrocooling, package icing and vacuum cooling procedures.

Storage temperature and humidity recommendations vary by vegetable crop and following the right guidelines is important for maximizing shelf life. Specific storage recommendations and information on pre-cooling methods can be found in the Guide to Vegetable Production in Ontario (OMAFRA Publication 839). Maintaining proper temperature is also important to prevent chilling or freezing injury, which presents as sunken, water-soaked spots on susceptible produce.

For certain storage crops, curing is a crucial step for optimizing shelf life. Curing allows skins to dry out and harden, increasing protection against infections that cause rot. The area used for curing should always be a well-ventilated space with adequate air circulation. Recommended curing guidelines for several storage vegetable crops are listed in Table 2.

Table 2. Curing Guidelines for Storage Vegetable Crops
Vegetable Time Temperature Relative Humidity Source(s)
Hard Squash (Hubbard, Buttercup, Kabocha, Butternut) 5-10 days 80-85°F 80-85% Pumpkin and Winter Squash Harvest and Storage, University of Massachusetts Extension

Winter Squash Curing & Storage Chart, Johnnys Selected Seeds

Onions 2-4 weeks 75-80°F 70-80% 2024 Midwest Vegetable Production Guide

Growing onions in home gardens, University of Minnesota Extension

Garlic Up to 2 weeks 75-90°F 60-75% Organic Garlic Production, Michigan State University Extension
Potatoes 10-14 days 50-60°F 95% Potato Harvest and Storage, University of Massachusetts Extension
Sweet Potatoes 3-5 days 85°F 85-90% Guide to Vegetable Production in Ontario (OMAFRA Publication 839)

In conclusion, there are various factors that contribute to the occurrence of post-harvest rots. By taking the right action during the growing season, at-harvest, and post-harvest, losses from premature decay can be minimized and crop quality preserved.

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