Pipelines

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These pipelines contain a collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell and other data type analysis. The notebooks include both data and code.

Important Note: We are keeping updating our GitHub Link. As of Jun 2025, there are 41 pipelines in the BMBL Notebooks GitHub Page. If you have any feedback or suggestions, feel free to open an issue or reach out to us.

GitHub Link