• Title: Construction of cell-specific gene co-regulation signatures based on single-cell transcriptomics analysis (R01GM131399-01).
    • 2018 – 2023
  • Supplementary:  Administrative Supplements Equipment (R01GM131399-03S1).
    • One-time device purchase (2020)

NIH-NCI (U24), MPI (PI: John Bridges)

  • Title: Participant Engagement and Cancer Genome Sequencing: Coordinating Center (U24CA252977).

NIH (U54), Contact PI of data analysis core (PI: Toren Finkel)

NIH (R21), MPI (Chung, Ma)

  • Title: Statistical Power Calculation Framework for Spatially Resolved Transcriptomics Experiments (R21HG012482).
    • 2022-2024

NIH (R01), co-I (PI: Dana McTigue)

  • Title: Spinal cord injury causes liver pathology and metabolic dysfunction (R01DK126008-02).
    • 2021-2026

NIH (R01), co-I (PI: Jason Wester)

  • Title: Development of neuronal subtypes and local circuits in the hippocampus (R01MH124870-02).
    • 2021-2026

NIH (R01), co-I (PI: Haitao Wen)

  • Title: Targeting immune inhibitory molecule SUSD2 to reverse immunosuppression (R01AI162779-02).
    • 2021-2026

NIH (R01), co-I (PI: Hongjun Fu) 

  • Title: Ectodermal-neural cortex 1 and neuronal vulnerability to tau pathology in Alzheimer’s disease (R01AG075092).
    • 2021-2026

NIH (R01), co-I (PI: Tamar Gur)

  • Title: Prenatal neuroinflammation: maternal microbiome contributions and behavioral consequences (R01MH129589-01).
    • 2022-2027

NIH (R01), co-I (PI: Xuefeng Liu)

  • Title: Conditionally reprogrammed cell model for castration-resistant prostate cancer (R01CA222148-05).
    • 2019-2023

NIH (R01), co-I (PI: Zihai Li)

  • Title: Targeting GRP94-TGF-beta pathway for cancer immunotherapy (R01CA262069-01).
    • 2021-2026

(Completed) NIH (R25), co-I (PI: Rusty Gunser)

  • Title: Training informaticians in big data (TIBD) (R25MD011712).
    • 2017-2021

(Completed) NIH (R01), co-I (PI: Yutong Zhao)

  • Title: Regulation of proteolysis by deubiquiting enzyme in lung inflammatory disease (R01HL131665).
    • 2019-2021


  • Title: A reinforced imputation framework for accurate gene expression recovery from single-cell RNA-seq data (NSF1945971).
    • 2021-2024

(Completed) NSF (IOS), co-PI (PI: Allison  Miller)

  • Title: Adapting perennial crops for climate change: Graft transmissible effects of rootstocks on grapevine shoots (NSF1546869).
    • 2016-2022

PIIO 2021 Pelotonia Idea Grant, MPI (William Carson; Qin Ma; Gang Xin)

  • Title: Targeting GPR84 to Overcome Macrophage Mediated Resistance to Immunotherapy for Breast Cancer.
    • 2022-2023

PIIO 2021 Pelotonia Idea Grant, MPI (Catherine Chung; Walter Hanel; Qin Ma; Anna Vilgelm)

  • Title: Integrating Biomimetic Tissue Engineering and Multi-Omics Systems Analysis to Overcome CTCL Drug Resistance.
    • 2022-2023

BrightFocus Foundation, co-I (PI: Hongjun Fu)

  • Title: Cerebral organoids to investigate cellular and neuronal network vulnerable in Alzheimer’s Disease and progressive supranuclear palsy.
    • 2021-2024

OSUCCC (PIIO), co-I (PI: Haitao Wen)

  • Title: Targeting immune inhibitory molecule SUSD2 to rejuvenate CD8+ T cell antitumor immunity.
    • 2021-2023

(Completed) BMI pilot, PI

  • Title: Identifying master transcription factors in adaptive immune systems using single-cell RNA/ATAC-seq data.
    • 05/01/2021-04/30/2022

(Completed) BMI pilot, MPI (PI: Dongjun Chung)

  • Title: A Computational Framework for Integrative Analysis of Single Cell TCR-seq and RNA-seq Data for the Immuno-Oncology Investigation of Sex Differences.
    • 05/01/2021-04/30/2022

(Completed) Center for Clinical and Translational Science – Pilot, PI

  • Title: A computational pipeline for functional profiling of human gut microbiome and their associations with human chronic diseases.
    • 09/1/2019 – 08/31/2020

(Completed) Center for Clinical and Translational Science – Pilot (Artificial Intelligence and Machine Learning in Translational Science and Human Health), PI

  • Title: Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-Seq data.
    • 09/1/2020 – 08/31/2021

(Completed) Center for Clinical and Translational Science – Pilot (Foods for Health Seed Grant), co-I

  • Title: Food Products for the Targeted Enrichment of Gut Microbes.
    • 09/01/2019 – 08/31/2020