• Title: Construction of cell-specific gene co-regulation signatures based on single-cell transcriptomics analysis. (R01GM131399-01)
    • 2018 – 2022
  • Supplementary:  Administrative Supplements Equipment (R01GM131399-03S1)
    • One-time device purchase (2020)


  • Title: Participant Engagement and Cancer Genome Sequencing: Coordinating Center.
    • 2020-2025

NIH (R25) (Co-I)

  • Title: Training informaticians in big data (TIBD) (R25MD011712).
    • 2017-2021

NIH (R01) (Co-I)

  • Title: Regulation of proteolysis by deubiquiting enzyme in lung inflammatory disease (R01HL131665).
    • 2019-2021


  • Title: A reinforced imputation framework for accurate gene expression recovery from single-cell RNA-seq data (NSF1945971).
    • 2021-2023


  • Title: Adapting perennial crops for climate change: Graft transmissible effects of rootstocks on grapevine shoots (NSF1546869).
    • 2016 – 2022

Center for Clinical and Translational Science – Pilot (PI)

  • Title: A computational pipeline for functional profiling of human gut microbiome and their associations with human chronic diseases
    • 09/1/2019 – 08/31/2020

Center for Clinical and Translational Science – Pilot (Artificial Intelligence and Machine Learning in Translational Science and Human Health) (PI)

  • Title: Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-Seq data
    • 09/1/2020 – 08/31/2021

Center for Clinical and Translational Science – Pilot (Foods for Health Seed Grant) (Co-I)

  • Title: Food Products for the Targeted Enrichment of Gut Microbes
    • 09/01/2019 – 08/31/2020