Resources

C. elegans resources

Database of C. elegans and other nematodes: https://wormbase.org/

Comprehensive guide to nematode genetics: http://www.wormbook.org/

Caenorhabditis Genetics Center (CGC): https://cgc.umn.edu/

C. elegans database maintained by Dr. Nikolaus Rajewsky https://elegans.mdc-berlin.de/

C. elegans Natural Diversity Resource maintained by Dr. Erik Andersen: https://www.elegansvariation.org/


Useful web tools

Primer Design: http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi

BioMath Calculators: https://www.promega.com/resources/tools/biomath-calculators

CRISPR guide RNA design: https://www.idtdna.com/site/order/designtool/index/CRISPR_CUSTOM

Codon Usage Database: http://www.kazusa.or.jp/codon/

Predict coding region: http://bioinf.uni-greifswald.de/augustus/

Yeast two Hybrid database: https://thebiogrid.org/

NCPR analysis: http://pappulab.wustl.edu/CIDER/about/

Protein-Protein Interaction: https://string-db.org/

UpSet: Visualizing Intersecting Sets: http://caleydo.org/tools/upset/

A daTabase of RNA binding proteins and AssoCiated moTifs: https://attract.cnic.es/index

Protein domain search: https://toolkit.tuebingen.mpg.de/tools/hhpred and https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi

Silent mutator: http://www.molbiotools.com/silentmutator.html

Protein structure comparison: http://ekhidna2.biocenter.helsinki.fi/dali/

Structure search by Foldseek: https://search.foldseek.com/search

Prediction of protein localization sites: https://psort.hgc.jp/form2.html

Animation on Biomolecular condensates: https://animationlab.utah.edu/phase-separation

C. elegans codon adaptor: https://worm.mpi-cbg.de/codons/cgi-bin/optimize.py

Protein abundance: https://pax-db.org/


Bioinformatics Tutorial

DeepVenn: https://www.deepvenn.com/

Python for Biologists: https://pythonforbiologists.com/

Kaggle: Faster Data Science Education: https://www.kaggle.com/learn/overview

Tutorial series from UConn: https://bioinformatics.uconn.edu/resources-and-events/tutorials-2/

Linux Commands Cheat Sheet: http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/linux.html


Documents/Talks