DOWNLOADS

AftrRAD

AftrRAD is a bioinformatic pipeline for processing and analyzing genotype-by-sequencing (GBS) data such as that generated with RADseq.  It is currently available for Mac and Linux systems.  Briefly, AftrRAD demultiplexes and aligns sequence reads, performs de novo locus identification, screens for paralogous loci, identifies polymorphic sites (including SNPs and indels), genotypes individuals, and formats the data for a variety of downstream analyses.  More information can be found in the paper describing the program (Sovic et al 2015, Mol Eco Res 15:1163-1171), and in the Getting Started folder included with AftrRAD.  We also encourage you to check out/use the AftrRAD google groups site (https://groups.google.com/forum/#!forum/aftrrad).

Click the links below to download AftrRAD.  Additional resources, including previous versions of the program, are available on the AftrRAD GitHub site (https://github.com/mikesovic/AftrRAD).

AftrRADv5.0 (Parallel version; Requires installation of Parallel:ForkManager – see manual for more info; 11 Feb 2016)

AftrRADv4.1 (1 Feb 2015)

To test out AftrRAD, download an example data file here…

AftrRAD_ExampleData