Note: Asterisk * indicates publications on tenure track. Circle o indicates PI’s students or interns. Dagger   indicates publications as a mentor of PI’s students or interns. PI’s name is bold

Wen-Hao Chiango, Titus Schleyer, Li Shen, Lang Li, and Xia Ning*. Pattern discovery from directional high-order drug-drug interaction relations. Journal of Healthcare Informatics Research, 2018. in press.

Yicheng Heo, Junfeng Liuo, and Xia Ning*. Drug selection via joint push and learning to rank. IEEE Transactions on Computational Biology and Bioinformatics, 2018. in press.

Junfeng Liuo and Xia Ning*. Differential compound prioritization via bi-directional selectivity push with power. Journal of Chemical Information and Modeling, 57(12):2958–2975, 2017. PMID: 29178784. IF: 3.760. [ DOI ]

Xueying Wang, Pengyue Zhang, Chien-Wei Chiang, Hengyi Wu, Li Shen, Xia Ning*, Donglin Zeng, Lei Wang, Sara K. Quinney, Weixing Feng, and Lang Li. Mixture drug-count response model for the high-dimensional drug combinatory effect on myopathy. Statistics in Medicine, 2017. in press. IF: 1.861. [ DOI ]

Chien-Wei Chiang, Pengyue Zhang, Xueying Wang, Lei Wang, Shijun Zhang, Xia Ning*, Li Shen, Sara K. Quinney, and Lang Li. Translational high-dimensional drug interaction discovery and validation using health record databases and pharmacokinetics models. Clinical Pharmacology & Therapeutics, 2017. in press. IF: 7.266. [ DOI ]

Junfeng Liuo and Xia Ning*. Multi-assay-based compound prioritization via assistance utilization: A machine learning framework. Journal of Chemical Information and Modeling, 57(3):484–498, 2017. PMID: 28234477. IF: 3.760. [ DOI ]

Fuzhen Zhuang, George Karypis, Xia Ning, Qing He, and Zhongzhi Shi. Multi-view learning via probabilistic latent semantic analysis. Information Sciences, 199:20–30, September 2012. IF: 3.740. [ DOI ]

Xia Ning, Michael Walters, and George Karypis. Improved machine learning models for predicting selective compounds. Journal of Chemical Information and Modelling, 52(1):38–50, 2012. IF: 4.304. [ DOI ]

Xia Ning and George Karypis. In silico structure-activity-relationship (SAR) models from machine learning: a review. Drug Development Research, 72(2):138–146, 2011. IF: 1.109. [ DOI ]

Xia Ning, Huzefa Rangwala, and George Karypis. Multi-assay-based structure-activity-relationship models: Improving structure-activity-relationship models by incorporating activity information from related targets. Journal of Chemical Information and Modeling, 49(11):2444–2456, 2009. IF: 3.822. [ DOI ]

Wen-Hao Chiango, Li Shen, Lang Li, and Xia Ning*. Drug-drug interaction prediction based on co-medication patterns and graph matching. Internal Journal of Computational Biology and Drug Design. under review.