Journal Club

Welcome to the AI4Path Lab Journal Club! Our sessions happen every Tuesday and Friday from 11:00 AM to 12:00 PM Eastern Time (ET), chaired by senior researchers. We discuss the latest cutting-edge research in computational pathology and AI applications across various domains.

Each session features a presenter discussing an innovative paper, followed by an engaging discussion where members share insights, highlight strengths and weaknesses, and explore new ideas. This collaborative learning experience is invaluable for deepening understanding beyond just reading papers.

If you are passionate about AI in computational pathology and want to present or participate, submit your details below.

Upcoming Sessions

Date Presenter Paper Title
Tuesday, Dec 02, 2025 Zhengjie Zhu “A versatile automated pipeline for quantifying virus infectivity by label-free light microscopy and artificial intelligence”
Friday, Dec 05, 2025 Abdul Rehman Akbar “PathAgent: Toward Interpretable Analysis of Whole-slide Pathology Images via Large Language Model-based Agentic Reasoning”
Tuesday, Dec 09, 2025 Hao Lu, PhD “TiDAR: Think in Diffusion, Talk in Autoregression”
Friday, Dec 12, 2025 Yixin Chen “ViLa-MIL: Dual-scale Vision-Language Multiple Instance Learning for Whole Slide Image Classification”
Tuesday, Dec 16, 2025 Ziyu Su, PhD
Friday, Dec 19, 2025 Hikmat Khan, PhD
Tuesday, Dec 23, 2025 Onur Koyun, PhD
Friday, Dec 26, 2025 Usman Afzaal
Tuesday, Dec 30, 2025 Yongxin Guo
Friday, Jan 02, 2026 Thomas Tavolara, PhD
Tuesday, Jan 06, 2026 Alejandro Leyva
Friday, Jan 09, 2026 Abbas Alili, PhD
Tuesday, Jan 13, 2026 Shihua Qin
Friday, Jan 16, 2026 Alaa Abukaresh
Tuesday, Jan 20, 2026 Tianyang Wang
Friday, Jan 23, 2026 Yixin Chen
Tuesday, Jan 27, 2026 Zhengjie Zhu
Friday, Jan 30, 2026 Abdul Rehman Akbar
Tuesday, Feb 03, 2026 Hao Lu, PhD
Friday, Feb 06, 2026 Usama Sajjad
Tuesday, Feb 10, 2026 Ziyu Su, PhD
Friday, Feb 13, 2026 Hikmat Khan, PhD
Tuesday, Feb 17, 2026 Onur Koyun, PhD
Friday, Feb 20, 2026 Usman Afzaal
Tuesday, Feb 24, 2026 Yongxin Guo
Friday, Feb 27, 2026 Thomas Tavolara, PhD
Tuesday, Mar 03, 2026 Alejandro Leyva
Friday, Mar 06, 2026 Abbas Alili, PhD
Tuesday, Mar 10, 2026 Shihua Qin
Friday, Mar 13, 2026 Alaa Abukaresh
Tuesday, Mar 17, 2026 Tianyang Wang
Friday, Mar 20, 2026 Yixin Chen
Tuesday, Mar 24, 2026 Zhengjie Zhu

Recent Sessions

Date Presenter Paper Title
Friday, Nov 28, 2025 Usama Sajjad “MATCH: Multi-faceted Adaptive Topo-Consistency for Semi-Supervised Histopathology Segmentation”
Tuesday, Nov 25, 2025 Tianyang Wang “Semantic and Visual Crop-Guided Diffusion Models for Heterogeneous Tissue Synthesis in Histopathology”
Friday, Nov 21, 2025 Alaa Abukaresh “Deep Learning on Histologic Slides Accurately Predicts Consensus Molecular Subtypes and Spatial Heterogeneity in Colon Cancer”
Tuesday, Nov 18, 2025 Shihua Qin “Adversarial Diffusion Distillation”
Friday, Nov 14, 2025 Abbas Alili, PhD “Small Language Models are the Future of Agentic AI”
Tuesday, Nov 11, 2025 Alejandro Leyva “Integrating Artificial Intelligence-Driven Digital Pathology and Genomics to Establish Patient-Derived Organoids as a Novel Alternative Model for Drug Response in Head and Neck Cancer”
Friday, Nov 07, 2025 Thomas Tavolara, PhD “Generative Medical Event Models Improve with Scale”
Tuesday, Nov 04, 2025 Yongxin Guo “Distilled Prompt Learning for Incomplete Multimodal Survival Prediction”
Friday, Oct 31, 2025 Usman Afzaal “Contrastive Learning for Unpaired Image-to-Image Translation”
Tuesday, Oct 28, 2025 Yashbir (Yash) Singh, ME, PhD [Guest Speaker] The Invisible Cancer: How AI Revolutionizes Hepatobiliary Imaging
Friday, Oct 24, 2025 Onur Koyun, PhD “Less is More: Recursive Reasoning with Tiny Networks”
Tuesday, Oct 21, 2025 Hikmat Khan, PhD “Ungeneralizable Examples”
Friday, Oct 17, 2025 Zhengjie Zhu “Cellpose-SAM: superhuman generalization for cellular segmentation”
Tuesday, Oct 14, 2025 Abdul Rehman Akbar “Why Language Models Hallucinate?”
Friday, Oct 10, 2025 Hao Lu, PhD “LLM Reasoning”
Tuesday, Oct 07, 2025 Usama Sajjad “Multi-instance curriculum learning for histopathology image classification with bias reduction”
Friday, Oct 3, 2025 Ziyu Su, PhD “KPVG: Knowledge-prompted vision-genomics model for cancer survival prediction in whole slide images”
Tuesday, Sep 30, 2025 Yixin Chen “Explainable AI for computational pathology identifies model limitations and tissue biomarkers”
Friday, Sep 26, 2025 Tianyang Wang, Yixin Chen, Alejandro Levya “Chain of Thought Empowers Transformers to Solve Inherently Serial Problems”
Tuesday, Sep 23, 2025 Alaa Abukaresh “SepsisLab: Early Sepsis Prediction with Uncertainty Quantification and Active Sensing”
Friday, Sep 19, 2025 Shihua Qin “PURE: Turning Polysemantic Neurons Into Pure Features by Identifying Relevant Circuits”
Tuesday, Sep 16, 2025 Alejandro Levya “Engineered heart muscle allografts for heart repair in primates and humans”
Friday, Sep 12, 2025 Usama Sajjad “Vision Transformer Adapter for Dense Predictions”
Tuesday, Sep 09, 2025 Alejandro Leyva “M3-GloDets: Multi-Region and Multi-Scale Analysis of Fine-Grained Diseased Glomerular Detection”
Friday, Sep 05, 2025 Yongxin Guo “PTCMIL: Multiple Instance Learning via Prompt Token Clustering for Whole Slide Image Analysis”
Tuesday, Sep 02, 2025 Usman Afzaal “RadZero: Similarity-Based Cross-Attention for Explainable Vision-Language Alignment in Radiology with Zero-Shot Multi-Task Capability”
Friday, Aug 29, 2025 Onur Koyun, PhD “Double-Tier Attention Based Multi-label Learning Network for Predicting Biomarkers from Whole Slide Images of Breast Cancer”
Tuesday, Aug 26, 2025 Hikmat Khan, PhD “CytoFM: The first cytology foundation model”
Wednesday, Aug 20, 2025 Ziyu Su, PhD “Segment Anything in Pathology Images with Natural Language”
Monday, Aug 18, 2025 Usama Sajjad “DINOv2 Meets Text: A Unified Framework for Image- and Pixel-Level Vision-Language Alignment”
Wednesday, Aug 13, 2025 Abbas Alili, PhD “CellSAM: A Foundation Model for Cell Segmentation”
Monday, Aug 11, 2025 Abdul Rehman Akbar “Learning biologically relevant features in a pathology foundation model using sparse autoencoders”
Wednesday, Aug 06, 2025 Yuhang Kang “SonicVisionLM: Playing Sound with Vision Language Models”
Monday, Aug 04, 2025 Hao Lu, PhD “Restructuring Vector Quantization with the Rotation Trick”
Wednesday, Jul 30, 2025 Azadeh Fakhrzadeh, PhD [Guest Speaker] “Histology Image Segmentation Using Pretrained Vision Transformers”
Monday, Jul 28, 2025 Alejandro Leyva “Gene-DML: Dual-Pathway Multi-Level Discrimination for Gene Expression Prediction from Histopathology Images”
Wednesday, Jul 23, 2025 Thomas Tavolara, PhD “PTaRL: Prototype-based Tabular Representation Learning via Space Calibration”
Monday, Jul 21, 2025 Yongxin Guo “Prototype Learning for Explainable Brain Age Prediction”
Wednesday, Jul 16, 2025 Usman Afzaal “CTUSurv: A Cell-Aware Transformer-Based Network With Uncertainty for Survival Prediction Using Whole Slide Images”
Monday, Jul 14, 2025 Onur Koyun, PhD “Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching”
Wednesday, Jul 09, 2025 Hikmat Khan, PhD “Do Multiple Instance Learning Models Transfer?”
Monday, Jul 07, 2025 Ziyu Su, PhD “CustomKD: Customizing Large Vision Foundation for Edge Model Improvement via Knowledge Distillation”
Wednesday, Jul 02, 2025 Usama Sajjad “Revisiting End-to-End Learning with Slide-level Supervision in Computational Pathology”
Monday, Jun 30, 2025 Hao Lu, PhD “Dinomaly: The Less Is More Philosophy in Multi-Class Unsupervised Anomaly Detection”
Wednesday, Jun 25, 2025 Abdul Rehman Akbar “Predicting the tumor microenvironment composition and immunotherapy response in non-small cell lung cancer from digital histopathology images”
Monday, Jun 23, 2025 Abbas Alili, PhD “Predicting Nottingham grade in breast cancer digital pathology using a foundation model”
Wednesday, Jun 18, 2025 Alejandro Leyva “Combining spatial transcriptomics with tissue morphology”
Monday, Jun 16, 2025 Thomas Tavolara, PhD “Absolute Zero: Reinforced Self-play Reasoning with Zero Data”
Wednesday, Jun 11, 2025 Onur Koyun, PhD “Multi-Resolution Pathology-Language Pre-training Model with Text-Guided Visual Representation”
Monday, Jun 09, 2025 Usman Afzaal “PointFormer: Keypoint-Guided Transformer for Simultaneous Nuclei Segmentation and Classification in Multi-Tissue Histology Images”
Wednesday, Jun 04, 2025 Yongxin Guo “Quantifying Attention Flow in Transformers”
Monday, Jun 02, 2025 Hikmat Khan, PhD “Prototype-Based Multiple Instance Learning for Gigapixel Whole Slide Image Classification”
Wednesday, May 28, 2025 Ziyu Su, PhD “Towards A Generalizable Pathology Foundation Model via Unified Knowledge Distillation”
Wednesday, May 21, 2025 Usama Sajjad “Combining 3D Image and Tabular Data via the Dynamic Affine Feature Map Transform”
Monday, May 19, 2025 Hao Lu, PhD “Self-generated Defocus Blur Detection via Dual Adversarial Discriminators”
Wednesday, May 14, 2025 Abdul Rehman Akbar “KG4Diagnosis: A Hierarchical Multi-Agent LLM Framework with Knowledge Graph Enhancement for Medical Diagnosis”
Monday, May 12, 2025 Abbas Alili, PhD ” BulkRNABert: Cancer prognosis from bulk RNA-seq based language models”
Wednesday, May 07, 2025 Thomas Tavolara, PhD “Scaling Monosemanticity: Extracting Interpretable Features from Claude 3 Sonnet”
Monday, May 05, 2025 Alejandro Leyva “FHBench: Towards Efficient and Personalized Federated Learning for Multimodal Healthcare”
Wednesday, Apr 30, 2025 Hikmat Khan, PhD “UnCLe SAM: Unleashing SAM’s Potential for Continual Prostate MRI Segmentation”
Monday, Apr 28, 2025 Usman Afzaal “Unsupervised Foundation Model-Agnostic Slide-Level Representation Learning”
Wednesday, Apr 23, 2025 Onur Koyun, PhD “Manifold Mixup: Better Representations by Interpolating Hidden States”
Monday, Apr 21, 2025 Yongxin Guo “Histo-Genomic Knowledge Distillation For Cancer Prognosis From Histopathology Whole Slide Images”
Wednesday, Apr 16, 2025 Mesut Sekar, PhD “Tissue concepts: Supervised foundation models in computational pathology”
Monday, Apr 14, 2025 Ziyu Su, PhD “Representation Alignment for Generation: Training Diffusion Transformers Is Easier Than You Think”
Wednesday, Apr 09, 2025 Usama Sajjad “Deep Clustering for Unsupervised Learning of Visual Features”
Monday, Apr 07, 2025 Hao Lu, PhD “DeepSeekMath: Pushing the Limits of Mathematical Reasoning in Open Language Models”
Wednesday, Apr 02, 2025 Abdul Rehman Akbar “PathFinder: A Multi-Modal Multi-Agent System for Medical Diagnostic Decision-Making Applied to Histopathology”
Monday, Mar 31, 2025 Thomas Tavolara, PhD ”Multimodal histopathologic models stratify hormone receptor-positive early breast cancer”
Wednesday, Mar 26, 2025 Alejandro Leyva ”SPIDER: A Comprehensive Multi-Organ Supervised Pathology Dataset and Baseline Models”
Wednesday, Mar 26, 2025 Usman Afzaal ”Incorporating Probabilistic Domain Knowledge into Deep Multiple Instance Learning”
Monday, Mar 24, 2025 Onur Koyun, PhD “Knowledge-enhanced Visual-Language Pretraining for Computational Pathology”
Wednesday, Mar 19, 2025 Yongxin Guo “Prompt Learning with One-Shot Setting based Feature Space Analysis in Vision-and-Language Models”
Monday, Mar 17, 2025 Usman Afzaal “A vision–language foundation model for precision oncology”
Wednesday, Mar 12, 2025 Abdul Rehman Akbar “Multi-V-Stain: Multiplexed Virtual Staining of Histopathology Whole-Slide Images”
Monday, Mar 10, 2025 Hikmat Khan, PhD “GUIDE: GUIDANCE-BASED INCREMENTAL LEARNING WITH DIFFUSION MODELS”
Wednesday, Mar 05, 2025 Mesut Sekar, PhD “A novel convolution transformer-based network for histopathology-image classification using adaptive convolution and dynamic attention”
Monday, Mar 03, 2025 Ziyu Su, PhD “DEADiff: An Efficient Stylization Diffusion Model with Disentangled Representations”
Wednesday, Feb 26, 2025 Usama Sajjad “Semi-supervised ViT knowledge distillation network with style transfer normalization for colorectal liver metastases survival prediction”
Monday, Feb 24, 2025 Hao Lu, PhD “Palette: Image-to-Image Diffusion Models”
Wednesday, Feb 19, 2025 Abdul Rehman Akbar “mTREE: Multi-Level Text-Guided Representation End-to-End Learning for Whole Slide Image Analysis”
“Agent Laboratory: Using LLM Agents as Research Assistants”
Monday, Feb 17, 2025 Alejandro Leyva “MGCT: Mutual-Guided Cross-Modality Transformer for Survival Outcome Prediction using Integrative Histopathology-Genomic Features”
Wednesday, Feb 12, 2025 Thomas Tavolara, PhD “Multimodal Whole Slide Foundation Model for Pathology”
Monday, Feb 10, 2025 Yongxin Guo “Aligning knowledge concepts to whole slide images for precise histopathology image analysis”
Wednesday, Feb 05, 2025 Usman Afzaal “Pathology-Knowledge enhanced multi-instance prompt learning for few-shot whole slide image classification”
Monday, Feb 03, 2025 Onur Koyun, PhD “Titans: Learning to Memorize at Test Time”
Wednesday, Jan 29, 2025 Hikmat Khan, PhD “Are Nuclear Masks All You Need For Improved Out-Of-Domain Generalization? A Closer Look At Cancer Classification In Histopathology​”
Monday, Jan 27, 2025 Mesut Sekar, PhD “Feature Re-Embedding: Towards Foundation Model-Level Performance in Computational Pathology”
Wednesday, Jan 22, 2025 Ziyu Su, PhD “Adaptive Supervised PatchNCE Loss for Learning H&E-to-IHC Stain Translation with Inconsistent Groundtruth Image Pairs”
Monday, Jan 20, 2025 Usama Sajjad “Automatic data augmentation to improve generalization of deep learning in H&E stained histopathology”
Wednesday, Jan 15, 2025 Hao Lu, PhD “Anti-Adversarially Manipulated Attributions for Weakly and Semi-Supervised Semantic Segmentation”
Monday, Jan 13, 2025 Abdul Rehman Akbar “ChatDev: Communicative Agents for Software Development”
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