Preprints not yet published in a peer-reviewed outlet:
Denninger JK, Miller LN, Walters AE, Hosawi M, Sebring G, Rieskamp JD, Ding T, Rindani R, Chen KS, Senthilvelan S, Volk A, Zhao F, Askwith C, Kirby ED. 2023 (currently in revision). Neural stem and progenitor cells support and protect adult hippocampal function via vascular endothelial growth factor secretion. bioRxiv, https://www.biorxiv.org/content/10.1101/2023.04.24.537801v1
OSU publications:
Kirby lab members are in bold.
Sridharan D, Dougherty JA, Ahmed U, Sanghvi SK, Alvi SB, Park KH, Knoblaugh SE, Singh H, Kirby ED, Khan M. (2024). Bioorthogonal non-canonical amino acid tagging to track transplanted human induced pluripotent stem cell-specific proteome. Stem Cell Research & Therapy, 15, 186. Full text here
Dause TJ, Denninger JK, Osap R, Walters AE, Rieskamp JD, Kirby ED. (2024) Autocrine VEGF drives neural stem cell proximity to the adult hippocampus vascular niche. Life Sci Alliance. 2024 Apr 17;7(7):e202402659. doi: 10.26508/lsa.202402659. PMID: 38631901; PMCID: PMC11024344. Full text here
Rieskamp JD, Rosado-Burgos I, Christofi, JE, Ansar E, Einstein D, Walters AE, Valentini V, Bruno JP, Kirby ED. (2023). Excitatory amino acid transporter 1 supports adult hippocampal neural stem cell self-renewal. iScience, 26, 107068. Full text here
Dause TJ, Denninger JK, Smith BM, Kirby ED. 2022. The neural stem cell secretome across neurodevelopment. Experimental Neurology, 355: 114142. Full text here
Smith BM, Saulsbery AI, Sarchet P, Devasthali N, Einstein D, Kirby ED. (2022). Oral and injected tamoxifen alter adult hippocampal neurogenesis in female and male mice. eNeuro,Full text here
Denninger JK, Walker LA, Chen X, Turkoglu A, Pan A, Tapp Z, Senthilvelan S, Rindani R, Kokiko-Cochran O, Bundschuh R, Yan P, Kirby ED. (2022). Robust transcriptional profiling and identification of differentially expressed genes with low input RNA sequencing of adult hippocampal neural stem and progenitor populations. Frontiers in Molecular Neuroscience. Full text here
Rieskamp JD, Smith B, Sarchet P, Kirby ED. (2022). Estimation of the density of neural, glial, and endothelial lineage cells in the adult mouse dentate gyrus. Neural Regeneration Research, 17: 1286-1292. Full text here
Rieskamp JD, Kirby ED. (2020) Editorial: Stem cell secretome and the central nervous system special issue. Brain Research, 1742, 146899. Full Text Here
Denninger JK, Chen X, Turkoglu AM, Sarchet P, Volk AR, Rieskamp JD, Yan P, Kirby ED. (2020). Defining the adult hippocampal neural stem cell secretome: in vivo versus in vitro transcriptomic differences and their correlation to secreted protein levels. Brain Research, 1735: 146717. Full text here
Dause TJ, Kirby ED. (2020). Poor concordance of floxed sequence recomnbination in single neural stem cells: Implications for cell autonomous studies. eNeuro, pii: ENEURO.0470-19.2020. Full text here
Walker LA, Sovic MG, Chiang C-L, Hu E, Denninger JK, Chen X, Kirby ED, Byrd JC, Muthusamy N, Bundchuh R, Yan P. (2020). CLEAR: Coverage-based Limiting-cell Experiment Analysis for RNA-seq. Journal of Translational Medicine, 10;18(1):63. doi: 10.1186/s12967-020-02247-6. Full text here.
Dause TJ, Kirby ED. (2019) Aging gracefully: social engagement joins exercise and enrichment as a key lifestyle factor in resistance to age-related cognitive decline. Neural Regeneration Research, 14, 39-42. Full text here
Denninger JK, Smith BM, Kirby, ED. (2018). Novel object recognition and object location behavioral testing in mice on a budget. Journal of Visualized Experiments, 141, e58593. Full text here
Smith BS, Yao X, Chen S, Kirby ED. (2018) “A Larger Social Network Enhances Spatial Memory and Reduces Hippocampal Microgliosis in Aged Mice” Frontiers in Aging Neuroscience, 10, 142. Full text here.
Rieskamp JD, Denninger JK, Dause TJ. (2018). “Identifying the Unique Role of Notch3 in Adult Neural Stem Cell Maintenance.” Journal of Neuroscience, 38, 3157-3159. Abstract here.
Publications before OSU:
Jaeger PA, Lucin KM, Britschgi M, Vardarajan B, Huang RP, Kirby ED, Abbey R, Boeve BF, Boxer AL, Farrer LA, Finch N, Graff-Radford NR, Head E, Hoffree M, Huang R, Johns H, Karydas A, Knopman DS, Loboda A, Masliah E, Narasimhan R, Petersen RC, Podtelezhnikov A, Pradhan S, Rademakers R, Sun CH, Younkin SG, Miller BL, Ideker T, Wyss-Coray T. (2016). Network-driven plasma proteomics expose molecular changes in the Alzheimer’s brain. Molecular Neurodegeneration, 11, 31. PubMed Link.
Muroy, SE, Long, KLE, Kaufer, D*, Kirby, ED*. (2016). Moderate stress-induced social bonding and oxytocin signaling are disrupted by predator odor in male rats. Neuropsychopharmacology, accepted. *Co-corresponding author. PubMed Link.
Kirby, ED, Kuwahara, AA, Messer, RL, Wyss-Coray, T. (2015). Adult hippocampal neural stem and progenitor cells regulate the neurogenic niche via secreted VEGF. Proceedings of the National Academy of Sciences USA, 112, 4128-4133. Direct submission. PubMed Link.
Castellano, JM, Kirby, ED, Wyss-Coray, T. (2015). Blood-borne revitalization of the aged brain. JAMA Neurology, in press. PubMed Link.
DeCarolis, NA, Kirby, ED, Wyss-Coray, T, Palmer, TD. (2015). The role of the microenvironmental niche in declining neural stem cell functions associated with biological aging. Cold Spring Harbor Perspectives in Medicine, 5, a025874.
Chetty, S, Friedman, AR, Taravosh-Lahn, K, Kirby, ED, Mirescu, C, Guo, F, Krupik, D, Nicholas, A, Geraghty, AC, Krishnamurthy, A, Tsai, M-K, Covarrubias, D, Wong, AT, Francis, DD, Sapolsky, RM, Palmer, TD, Pleasure, D, Kaufer, D. (2014). Stress and glucocorticoids promote oligodendrogenesis in the adult hippocampus. Molecular Psychiatry, 19, 1275-1283. PubMed Link.
Kirby, ED, Muroy, SE, Sun, WG, Covarrubias, D, Leong, MJ, Barchas, LA, Kaufer, D. (2013). Acute stress enhances adult rat hippocampal neurogenesis and activation of newborn neurons via secreted astrocytic FGF2. eLife, 2, e00362. PubMed Link. F1000 Prime Recommended
Kirby, ED, Jensen, K, Goosens, KA, Kaufer, D. (2012). Stereotaxic surgery for excitotoxic lesion of specific brain nuclei in the adult rat. Journal of Visualized Experiments, 65, 4079. PubMed Link.
Kirby, ED, Friedman, AR, Covarrubias, D, Ying, C, Sun, WG, Goosens, KA, Sapolsky, RM, Kaufer, D. (2012). Basolateral amygdala regulation of adult hippocampal neurogenesis and fear-related activation of newborn neurons. Molecular Psychiatry, 17, 527-536. PubMed Link. Featured as cover image
Kirby, ED, Geraghty, AC, Ubuka, T, Bentley, GE, & Kaufer, D. (2009). Stress increases putative gonadotropin inhibitory hormone and decreases luteinizing hormone in male rats. Proceedings of the National Academy of Sciences USA, 106, 11324-11329. Direct submission with pre-arranged editor. PubMed Link.
Kirby, ED & Kaufer, D. (2009). “Stress and adult neurogenesis in the mammalian central nervous system.” In: H. Soreq, A. Friedman & D. Kaufer, eds. STRESS: from molecules to behavior. Weinheim, Germany; Wiley-Blackwell.
Glenn, MJ, Kirby, ED, Gibson, EM, Wong-Goodrich, S, Mellot, TJ, Blusztajn, JK, Williams, CL. (2008). Age-related declines in exploratory behavior and markers of hippocampal plasticity are attenuated by prenatal choline supplementation in rats. Brain Research, 1237, 110-123. PubMed Link.
Glenn, MJ, Gibson, EM, Kirby, ED, Mellot, TJ, Blusztajn, JK, Williams, CL. (2007). Prenatal choline availability modulates hippocampal neurogenesis and neurogenic responses to enriching experiences in adult female rats. European Journal of Neuroscience, 25, 2473-2482. PubMed Link.
Kirby, ED, Williams, VP, Hocking, MC, Lane, JD, Williams, RB. (2006). Psychosocial benefits of three formats of a standardized behavioral stress management program. Psychosomatic Medicine, 68, 816-823. PubMed Link.