Postdoctoral Position in Snake Conservation Genomics 2023

Position: Postdoctoral Research Scholar

Department: Evolution, Ecology, and Organismal Biology

Location: Ohio State University

Start date (duration): 1 September 2023 (2 years)

Application Deadline: 15 June 2023

Position Overview:

The Gibbs Lab is recruiting a a highly motivated and talented individual to join as a Postdoctoral Research Scholar to lead a project on the population genomics of endangered Massasauga Rattlesnakes (Sistrurus catenatus).  The successful candidate will play a crucial role in advancing ongoing research projects using existing whole genome sequence data from 100s of individuals from multiple populations to address a variety of fundamental questions in conservation/evolutionary genomics. The research questions include interaction between levels of adaptive variation and genetic drift in small isolated populations, identifying and assessing levels of variation in putative disease resistance genes, and using demographic and ancestry based analyses to assess levels of gene flow between population. The postdoc will have the opportunity to develop their own research agenda within the scope of our lab’s interests.

About the Lab:

The Gibbs Lab is a vibrant and dynamic research group dedicated to using genomic data to guide the conservation of biodiversity. We use cutting-edge genomics, computational biology, and evolutionary theory to investigate a wide range of biological questions in conservation and evolutionary biology. Our lab provides an intellectually stimulating and collaborative environment for conducting high-impact research and offers excellent opportunities for professional development.

Recent manuscripts from the lab include:

Ochoa, A., Broe, M., Moriarty Lemmon, E., Lemmon, A.R., Rokyta, D.R., and Gibbs, H. L. 2020. Drift, selection and adaptive variation in small populations of a threatened rattlesnake. Molecular Ecology 29:  2612-2625.

Ochoa, A. and Gibbs, H.L. 2021. Genomic signatures of inbreeding and mutation load in a threatened rattlesnake. Molecular Ecology 30:5454–5469.

Mathur S., Haynes, E., Allender, M., Gibbs, H.L. 2022. Genetic mechanisms and biological processes underlying host response to ophidiomycosis (Snake Fungal Disease) inferred from tissue-specific transcriptome analyses. bioRxiv, 2022.03. 25.485740.

Mathur, S., Mason, A., Bradburd, G., Gibbs, H.L. Functional genomic diversity is correlated with intensity of genetic drift in an endangered rattlesnake. PNAS (in review).

The position is funded through the Ohio Biodiversity Conservation Partnership (https://obcp.osu.edu) and will involve interacting with the Ohio Division of Wildlife personnel. The postdoc will have the opportunity to be involved in other ongoing research projects such as the evolutionary genomics studies of Brazilian snakes in collaboration with researchers at the Instituto Butantan in Sao Paulo, Brazil.

Responsibilities:

  • Conduct independent research and contribute to ongoing projects in the lab.
  • Design and execute experiments using a combination of wet-lab techniques and computational approaches.
  • Analyze genomic and evolutionary datasets, using statistical and bioinformatics tools.
  • Curate and maintain large datasets, create new bioinformatic pipelines, and explore new computational tools for data analyses
  • Publish research findings in top-tier scientific journals and present at national and international conferences.
  • Collaborate with other lab members and foster a collegial and collaborative research environment.
  • Assist in mentoring and training graduate and undergraduate students.

MINIMUM QUALIFICATIONS:

  • PhD in evolutionary biology, conservation genetics, bioinformatics or a related field
  • Expertise in population/conservation genomics or evolutionary genetics
  • Fluency in a programming language such as Perl, Python, or R
  • Publication record

DESIRED QUALIFICATIONS:

  • Experience with analysis of whole genome data, statistical methods, and bioinformatics tools
  • Experience with demographic modeling using high performance computing resources

START DATE AND DURATION

The position is available 1 September 2023. The initial appointment is for one year with the strong possibility of reappointment for one additional year pending satisfactory performance. Salary is $60K with full benefits.

APPLICATION PROCESS

General inquiries and/or applications should be sent to H. Lisle Gibbs (gibbs.128@osu.edu). Interested candidates should send the following: 1) a CV, 2) Statement of research interests and how current professional abilities match possible project goals, 3) Names and contact information for three references. Review of applications will start 15 June 2023 and will continue until the position is filled.

ABOUT COLUMBUS

The Ohio State University campus is located in Columbus, the capital city of Ohio. Columbus is the center of a rapidly growing and diverse metropolitan area with a population of over 1.5 million. The area offers a wide range of affordable housing, many cultural and recreational opportunities, excellent schools, and a strong economy based on government as well as service, transportation and technology industries (see http://liveworkplaycolumbus.com/). Columbus has consistently been rated as one of the Top U.S. cities for quality of life, and was selected as one of the Top 10 cities for African Americans to live, work, and play by Black Enterprise magazine. Additional information about the Columbus area is available at http://www.columbus.org.

We look forward to welcoming an enthusiastic and talented researcher to our lab, where they will have the opportunity to make significant contributions to the fields of conservation genomics and evolutionary biology and genomics!

The Ohio State University is an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation or identity, national origin, disability status, or protected veteran status.

 

PhD position: Speciation Genomics and Venom Evolution in Brazilian Pitvipers

The Gibbs Lab, Department of EEOB, Ohio State University is recruiting a Ph.D. student, to begin in Fall 2020, to develop a dissertation project on the genomics of speciation and venom evolution in island species of Brazilian pitvipers (Bothrops sp.). This project is a collaboration between Dr. Felipe Grazziontin and Dr. Inacio Azevedo (both at the Instituto Butantan) and the Gibbs lab to use the island Bothrops system to study if there is convergence at the genomic level in adaptations associated with species formation on multiple islands off the southern coast of Brazil. There would be the opportunity for training visits to Instituto Butantan as part of the project.

The ideal applicant would have strong quantitative skills and proficiency or interest in learning bioinformatics techniques and experience in using molecular data to examine evolutionary questions. A Master’s degree is preferred but not required. This is primarily a lab-based project but with the possible opportunity for limited fieldwork.

The student would join an active lab that applies genomic techniques and bioinformatics analyses to a wide range of questions in the evolutionary biology and conservation genetics of vertebrates. The Department of EEOB provides year-round financial support (~ $29K/yr plus benefits and tuition) for PhD students for the duration of their program.

Interested students should contact Dr. H. Lisle Gibbs, Department of EEOB, Ohio State University at gibbs.128@osu.edu with a statement of interest, a CV, transcripts and GRE scores if available (not required). I will start reviewing applications on 1 October.  Please see the lab (https://u.osu.edu/gibbslab) and department (http://eeob.osu.edu/) websites for more information.

PhD position in Snake Venom Evolution

 

The Gibbs Lab in the Department of EEOB at Ohio State University is recruiting a Ph.D. student, to begin in Fall 2019, to develop a dissertation project on the evolution of venom diversity at the molecular level among closely-related species of New World snakes. The student will join a group that uses genomic, transcriptome and proteomic data to study snake venom proteins as a model for the evolution of adaptations at the molecular level. The project would be part of an ongoing NSF (US)-FAPESP (Brazil) Dimensions of Biodiversity grant on snake venom evolution that involves institutions in the US (Ohio State, Florida State University, and Clemson University) and Brazil (Instituto Butantan). There would be the opportunity for training visits to these institutions.

The ideal applicant would have strong quantitative skills and proficiency or interest in learning bioinformatics techniques and experience in using molecular data to examine evolutionary questions. A Master’s degree is preferred but not required. This is primarily a lab-based project but with the possible opportunity for limited fieldwork.

The student would join an active lab that applies genomic techniques and bioinformatics analyses to a wide range of questions in the evolutionary biology and conservation genetics of vertebrates. The Department of EEOB provides year-round financial support (~ $28K/yr plus benefits and tuition) for PhD students for the duration of their program.

Interested students should contact Dr. H. Lisle Gibbs, Department of EEOB, Ohio State University at gibbs.128@osu.edu with a statement of interest, a CV, transcripts and GRE scores if available. I will start reviewing applications on 15 October.  Please see the lab (https://u.osu.edu/gibbslab) and department (http://eeob.osu.edu/) websites for more information.

Winter/Spring News 2018

  • Former PhD student Rob Denton accepted a tenure-track position at University of Minnesota-Morris – congratulations!
  • Jamin Wieringa visited collaborators at University of Maryland to discuss bat research in May
  • Alex Ochoa attended a workshop on transcriptomic analyses at Indiana University in May.
  • Jamin W. and Mike Broe participated in the OSU Museum of Biological Diversity Open House in April.
  • Lisle – Gave an invited talk at Venom Week 2018, Texas A&M Kingsville and seminars at Ohio University, Purdue University and Queen’s University Biology Station.

Postdoctoral Position in Snake Venom Evolution

The Gibbs Lab (https://u.osu.edu/gibbslab/) in the Department of Evolution, Ecology and Organismal Biology, Ohio State University has an opening for an NSF-funded Postdoctoral Research Associate for research on snake venom evolution. The postdoc will join a collaborative research group of US and Brazilian scientists funded through a joint NSF-FAPESP grant to study venom evolution in snakes at micro- to macroevolutionary timescales.  Members of the group include D. Rokyta (Florida State University), C. Parkinson (University of Central Florida) and L. Gibbs (Ohio State University), I. Avezedo, A. Moura, E. Hingst-Zaher (Instituto Butantan) and H. Zaher (Universidade de São Paulo). The specific project will focus on using comparative analyses to explore the links between venom variation at the molecular level and rates of speciation in venomous snakes but will also  be involved in research assessing links between the genomic, proteomic and functional variation in venom across species. There will be the chance to visit participating laboratories in the US and Brazil and participate in field work.

MINIMUM QUALIFICATIONS:

  • PhD in evolutionary biology, phylogenetics. bioinformatics or a related field
  • Expertise in comparative analyses and/or molecular evolution
  • Fluency in a programming language such as Perl or Python
  • Record of publication

DESIRED QUALIFICATIONS:

  • Experience with analyzing genomic, transcriptomic and proteomic data
  • Experience with the use of high performance computing resources

START DATE AND DURATION

The position is available 15 September 2017. The initial appointment is for one year with the possibility of reappointment for three additional years pending satisfactory performance. Salary is $47.5K with full benefits.

APPLICATION PROCESS

Interested candidates should send the following to H. Lisle Gibbs (gibbs.128@osu.edu): 1) a CV, 2) Statement of research interests and how current professional abilities match possible project goals, 3) Names and contact information for three references. Review of applications will start 15 January 2017 with interviews taking place in February. I hope to offer the position to a candidate by March 2017.

ABOUT COLUMBUS

The Ohio State University campus is located in Columbus, the capital city of Ohio. Columbus is the center of a rapidly growing and diverse metropolitan area with a population of over 1.5 million. The area offers a wide range of affordable housing, many cultural and recreational opportunities, excellent schools, and a strong economy based on government as well as service, transportation and technology industries (see http://liveworkplaycolumbus.com/). Columbus has consistently been rated as one of the Top U.S. cities for quality of life, and was selected as one of the Top 10 cities for African Americans to live, work, and play by Black Enterprise magazine. Additional information about the Columbus area is available at http://www.columbus.org.

The Ohio State University is an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation or identity, national origin, disability status, or protected veteran status.

Postdoctoral Position in Vertebrate Conservation Genetics

The Gibbs Lab (https://u.osu.edu/gibbslab/) in the Department of Evolution, Ecology and Organismal Biology, Ohio State University has an opening for a Postdoctoral Research Associate in Vertebrate Conservation Genetics. The postdoc will work on ongoing projects assessing levels of adaptive variation in populations of endangered Massasauga Rattlesnakes (Sistrurus catenatus) There is flexibility in terms of the specific project on which the postdoc will focus but will involve one or more of the following: 1) Development of new genetic tools based transcriptome analysis and DNA capture arrays to assess population variation in immune system genes 2) Analysis of existing data on population level variation in venom genes to infer how recent population bottlenecks have influenced levels of variation 3) Analyses of genomic-scale data using demographic modeling techniques to infer population histories (see Sovic et al. 2016. Heredity 117: 358-366).  The position is funded through the Ohio Biodiversity Conservation Partnership (https://obcp.osu.edu) and will involve interactions with the Ohio Division of Wildlife personnel. The postdoc will join an active lab with ongoing NSF-funded research on venom evolution in snakes and other projects on vertebrate conservation genetics.

MINIMUM QUALIFICATIONS:

  • PhD in evolutionary biology, molecular biology, conservation genetics, bioinformatics or a related field
  • Expertise in population genetics, evolutionary genetics, or molecular evolution
  • Fluency in a programming language such as Perl or Python
  • Record of publication

DESIRED QUALIFICATIONS:

  • Experience with analysis of NGS sequence data
  • Experience with demographic modeling using high performance computing resources

START DATE AND DURATION

The position is available 1 September 2017. The initial appointment is for one year with the possibility of reappointment for multiple additional years pending satisfactory performance. Salary is $47.5K with full benefits.

APPLICATION PROCESS

Interested candidates should send the following to H. Lisle Gibbs (gibbs.128@osu.edu): 1) a CV, 2) Statement of research interests and how current professional abilities match possible project goals, 3) Names and contact information for three references. Review of applications will start 7 January 2017 with interviews taking place in February. I hope to offer the position to a candidate by March 2017.

ABOUT COLUMBUS

The Ohio State University campus is located in Columbus, the capital city of Ohio. Columbus is the center of a rapidly growing and diverse metropolitan area with a population of over 1.5 million. The area offers a wide range of affordable housing, many cultural and recreational opportunities, excellent schools, and a strong economy based on government as well as service, transportation and technology industries (see http://liveworkplaycolumbus.com/). Columbus has consistently been rated as one of the Top U.S. cities for quality of life, and was selected as one of the Top 10 cities for African Americans to live, work, and play by Black Enterprise magazine. Additional information about the Columbus area is available at http://www.columbus.org.

The Ohio State University is an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation or identity, national origin, disability status, or protected veteran status.