Publications

2019:

  1. Leggett, A., Wang, C., Li, D., Somogyi, A., Bruschweiler-Li, L., & Bruschweiler, R. (2019). Identification of unknown metabolomics mixture compounds by combining NMR, MS, and cheminformatics. Methods in Enzymology. 615, 407-421. https://doi.org/10.1016/bs.mie.2018.08.038
  2. A. Krishnamohan, S. Dodbele and J. E. Jackman. Insights into Catalytic and tRNA Recognition Mechanism of the Dual-Specific tRNA Methyltransferase from Thermococcus kodakarensis. Genes 2019, 10(2), 100; https://doi.org/10.3390/genes10020100
  3. Dodbele S., Moreland B., Gardner S., Bundschuh R., Jackman J.E. (2019) 5′-end sequencing in Saccharomyces cerevisiae offers new insights into 5′-ends of tRNAHis and snoRNAs. FEBS Letters. 1873–3468.13364. (In press.) doi:10.1002/1873-3468.13364
  4. Pöhler MT*, Roach TM*, Betat H, Jackman JE, Mörl M. A Temporal Order in 5′- and 3′- Processing of Eukaryotic tRNAHis. Int J Mol Sci. 2019 Mar 19;20(6). pii: E1384. doi: 10.3390/ijms20061384. *authors contributed equally
  5. Benjamin S. Brigham, Jonathan P. Kitzrow, Joshua-Paolo C. Reyes, Karin Musier-Forsyth, and James B. Munro. Intrinsic conformational dynamics of the HIV-1 genomic RNA 5′UTR. PNAS. 2019 May 21. 116 (21) 10372-10381; first published May 8, 2019. https://doi.org/10.1073/pnas.1902271116
  6. Dorayappan KDP, Gardner ML, Hisey CL, Zingarelli RA, Smith BQ, Lightfoot MDS, Gogna R, Flannery MM, Hays J, Hansford DJ, Freitas MA, Yu L, Cohn DE, Selvendiran K. A microfluidic chip enables isolation of exosomes and establishment of their protein profiles and associated signaling pathways in ovarian cancer. Cancer Res. 2019 May 16. pii: canres.3538.2018. doi: 10.1158/0008-5472.CAN-18-3538

2018:

  1. Slater, J. W.; Marguet, S. C.; Monaco, H. A.; Shafaat, H. S. Going beyond Structure: Nickel-Substituted Rubredoxin as a Mechanistic Model for the [NiFe] Hydrogenases. J. Am. Chem. Soc. 2018, 140 (32), 10250–10262.
  2. Dayeh D.M*., Cantara W.A*., Kitzrow, J.P., Musier-Forsyth, K., Nakanishi, K. Argonaute-based programmable RNase as a tool for cleavage of highly-structured RNA. Nucleic Acids Research (2018). Online.
  3. Dayeh D.M., Kruithoff, B.C., & Nakanishi, K. Structural and functional analyses reveal the contributions of the C- and N-lobes of Argonaute protein to selectivity of RNA target cleavage. Journal of Biological Chemistry (2018). 203, 6308-6325″
  4. Sahai, S.K.*, Steiner, RE*, Au, M. G., Graham, J. M., Salamon, N., Ibba, M., Pierson, T. M. (2018) FARS2 mutations presenting with pure spastic paraplegia and lesions of the dentate nuclei. Annals of Clinical and Translational Neurology. 5(9): 1128–1133
  5. Steiner, RE and Ibba, M. (2018) Bridging the Gap between tRNA Modifications and the Respiratory Chain. Biochemistry. 57 (18), pp 2565–2566
  6. Mohler, K., Mann, R., Kyle, A., Reynolds, N., and Ibba, M. (2018) Aminoacyl-tRNA Quality Control is Required for Efficient Activation of the TOR Pathway Regulator Gln3p. RNA Biology. 15:4-5, 594-603
  7. Bowman, Jacob D., and Steffen Lindert. Molecular Dynamics and Umbrella Sampling Simulations Elucidate Differences in Troponin C Isoform and Mutant Hydrophobic Patch Exposure. The Journal of Physical Chemistry B 122.32 (2018): 7874-7883.
  8. Maugeri, P. T., Griese, J. J., Branca, R. M., Miller, E. K., Smith, Z. R., Eirich, J., … & Shafaat, H. S. (2018). Driving protein conformational changes with light: Photoinduced structural rearrangement in a heterobimetallic oxidase. Journal of the American Chemical Society, 140(4), 1471-1480.
  9. Wu, J.; Sabag-Daigle, A.; Borton, M.A.; Kop, L.F.M.; Szkoda, B.E.; Deatherage Kaiser, B.L.; Lindemann, S.R.; Renslow, R.S.; Wei, S.; Nicora, C.D.; Weitz, K.K.; Kim, Y.; Adkins, J.N.; Metz, T.O.; Boyaka, P.; Gopalan, V.; Wrighton, K.C.; Wysocki, V.H.; Ahmer, B.M. Salmonella-mediated Inflammation Eliminates Competitors  for Fructose-Asparagine in the Gut. Infection and Immunity. 2018, e00945-17.
  10. Schneider, C. R.; Manesis, A. C.; Stevenson, M. J.; Shafaat, H. S. A Photoactive Semisynthetic Metalloenzyme Exhibits Complete Selectivity for CO 2 Reduction in Water. Chem. Commun. 2018, 54 (37), 4681–4684.
  11. Sherwood, A.V.*, Frandsen, J.K.*, Grundy, F.J., Henkin, T.M. (2018) New tRNA contacts facilitate ligand binding in a Mycobacterium smegmatis T box riboswitch. Proc. Natl. Acad. Sci. U.S.A. 115(15):3894-3899, doi:10.1073/pnas.1721254115
  12. Dodbele S., Jackman J.E., Gray M.W. (2018) Mechanisms and Evolution of tRNA 5′-Editing in Mitochondria. In: Cruz-Reyes J., Gray M. (eds) RNA Metabolism in Mitochondria. Nucleic Acids and Molecular Biology, vol 34. Springer, Cham. doi: 10.1007/978-3-319-78190-7_7
  13. Jovylyn Gatchalian, Xiaodong Wang, Jinzen Ikebe, Khan Cox, Adam Tencer, Yi Zhang, Nathaniel Burge, Luo Di, Matthew Gibson, Catherine Musselman, Michael Poirier, Hidetoshi Kono, Jeffrey Hayes. (2017). Accessibility of the histone H3 tail in the nucleosome for binding of paired readers. Nature Communications, 8 (1), 1489. PMCID: PMC5686127
  14. Jo Marie Bacusmo*, Alexandra B. Kuzmishin*, William A. Cantara, Yuki Goto, Hiroaki Suga, and Karin Musier-Forsyth. Quality control by trans-editing factor prevents global mistranslation of non-protein amino acid α-aminobutyrate. (2018) RNA Biology, 15(4-5):576-585. *authors contributed equally

  15. Jikang Wu, Anice Sabag-Daigle, Mikayla A. Borton, Linnea F. M. Kop, Blake E. Szkoda, Brooke L. Deatherage Kaiser, Stephen R. Lindemann, Ryan S. Renslow, Siwei Wei, Carrie D. Nicora, Karl K. Weitz, Young-Mo Kim, Joshua N. Adkins, Thomas O. Metz, Prosper Boyaka, Venkat Gopalan, Kelly C. Wrighton, Vicki H. Wysocki, Brian M. M. Ahmer. Salmonella-Mediated Inflammation Eliminates Competitors For Fructose-Asparagine In The Gut. Infect. Immun. 1–13 (2018).

2017:

  1. Reed, A.J., Vyas, R., Raper, A.T., and Suo, Z. (2017) Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase. J. Am. Chem.Soc. 139, 465-471. DOI: 10.1021/jacs.6b11258
  2. Eric M. Danhart, Marina Bakhtina, William A. Cantara, Alexandra B. Kuzmishin, Brianne Sanford, Oscar Vargas-Rodriguez, Marija Košutić, Yuki Goto, Hiroaki Suga, Ronald Micura, Mark P. Foster, and Karin Musier- Forsyth. Conformational and chemical selection by a trans-acting editing domain. (2017) Proc Natl Acad Sci U. S. A., Aug 15;114(33)

2016:

  1. Yu, R. R., Mahto, S. K., Justus, K., Alexander, M. M., Howard, C. J., and Ottesen, J. J. (2016) Hybrid phase ligation for efficient synthesis of histone proteins. Org Biomol Chem 14, 2603-2607
  2. Sunkel, B., Wu, D., Chen, Z., Wang, C. M., Liu, X., Ye, Z., Horning, A. M., Liu, J., Mahalingam, D., Lopez-Nicora, H., Lin, C. L., Goodfellow, P. J., Clinton, S. K., Jin, V. X., Chen, C. L., Huang, T. H., and Wang, Q. (2016) Integrative analysis identifies targetable CREB1/FoxA1 transcriptional co-regulation as a predictor of prostate cancer recurrence. Nucleic Acids Res
  3. Smith, C. E., and Bell, C. E. (2016) Domain Structure of the Redbeta Single-Strand Annealing Protein: the C-terminal Domain is Required for Fine-Tuning DNA-binding Properties, Interaction with the Exonuclease Partner, and Recombination in vivo. J Mol Biol 428, 561-578
  4. McKenney, K. M., and Alfonzo, J. D. (2016) From Prebiotics to Probiotics: The Evolution and Functions of tRNA Modifications. Life (Basel) 6
  5. Liu, Q., and Fredrick, K. (2016) Intersubunit Bridges of the Bacterial Ribosome. J Mol Biol
  6. Harshman, S. W., Canella, A., Ciarlariello, P. D., Agarwal, K., Branson, O. E., Rocci, A., Cordero, H., Phelps, M. A., Hade, E. M., Dubovsky, J. A., Palumbo, A., Rosko, A., Byrd, J. C., Hofmeister, C. C., Benson, D. M., Jr., Paulaitis, M. E., Freitas, M. A., and Pichiorri, F. (2016) Proteomic characterization of circulating extracellular vesicles identifies novel serum myeloma associated markers. J Proteomics 136, 89-98
  7. Raper, A.T.*, Reed, A.J.*, Gadkari V.V., Suo Z. (2016) Advances in Structural and Single-Molecule Methods for Investigating DNA Lesion Bypass and Repair Polymerases. Chem. Res.Toxicol. Accepted for Publication. doi: 10.1021/acs.chemrestox.6b00342
  8. Tokarsky, E.J., Gadkari, V.V., Zahurancik, W.J., Malik, C.K., Basu, A.K., Suo, Z. (2016) Pre-Steady-State Kinetic Investigation of Bypass of a Bulky Guanine Lesion by Human Y-family DNA Polymerases. DNA Repair. 46, 20-28. doi: 10.1016/j.dnarep.2016.08.002.
  9. Raper, A.T.*, Gadkari, V.V.*, Maxwell, B.A., and Suo, Z. (2016) Single-Molecule Investigation of Response to Oxidative DNA Damage by a Y-Family DNA Polymerase. Biochemistry. 55(14),2187-2196. doi: 10.1021/acs.biochem.6b00166.
  10. Hamm ML, McFadden EJ, Ghio M, Lindell MA, Gerien KS, O’Handley SF. (2016). Insights into the substrate specificity of the MutT pyrophosphohydrolase using structural analogues of 8-oxo-2′-deoxyguanosine nucleotide. Bioorg Med Chem Lett. 26(8): 2014-7.
  11. Sizemore G.M.*, Balakrishnan S*, Hammer AM, Thies KA, Trimboli AJ, Wallace JA, Sizemore ST, Kladney RD, Shinde N, Woelke SA, Yu L, Fernandez SA, Chakravarti A, Leone G,Ostrowski MC. (2016) Stromal PTEN inhibits the expansion of mammary epithelial stem cells through Jagged-1. Oncogene, doi: 10.1038/onc.2016.383
  12. Kudryashova, E., Heisler, D.B., and Kudryashov, D. (2016) Pathogenic mechanisms of actin cross-linking toxins – peeling away the layers. Volume “Actin Cytoskeleton and Bacterial Infection”. Springer book series “Current Topics in Microbiology and Immunology” (CTMI). Springer Berlin Heidelberg, 2016 Nov 18. [Epub ahead of print] DOI: 10.1007/82_2016_22
  13. Mohler, K., Mann, R. and Ibba, M. (2016) Isoacceptor specific characterization of tRNA aminoacylation and misacylation in vivo. METHODS. 10.1016/j.ymeth.2016.09.003
  14. Liu X, Pitarresi JR, Cuitino MC, Kladney RD, Woelke SA, Sizemore GA, Nayak SG, Egriboz O, Schweickert PG, Yu L, et al. (2016) “Genetic ablation of Smoothened in pancreatic fibroblasts increases acinar-ductal metaplasia”. Genes Dev; 30(17): 1943-55, doi:https://www.ncbi.nlm.nih.gov/pubmed/27633013
  15. Pitarresi JR, Liu X, Sharma SM, Cuitino MC, Kladney RD, Mace TA, Donohue S,Nayak SG, Qu C, Lee J, et al. (2016) “Stromal Ets2 regulates chemokine production and immune cell recruitment during acinar-to-ductal metaplasia”. Neoplasia; 18(9): 541-52,doi:https://www.ncbi.nlm.nih.gov/pubmed/27659014
  16. Araya-Secchi, R., Neel, B., and Sotomayor, M. (2016) An elastic element in the protocadherin-15 tip link of the inner ear. Nature Communications, 7:13458.
  17. Todd, G.C., Duchon, A., Inlora, J., Olson, E.D., Musier-Forsyth, K., Ono, A. (2016) Inhibition ofHIV-1 Gag-membrane interactions by specific RNAs. RNA. in press.
  18. Cantara, W.A., Olson, E.D., Musier-Forsyth, K. (2016) Analysis of RNA structure using small-angle X-ray scattering. Methods. in press.
  19. Post, K.*, Olson, E.D.*, Naufer, M.N., Gorelick, R.J., Rouzina, I., Williams, M.C., Musier-Forsyth,K., Levin, J.G. (2016) Mechanistic differences between HIV-1 and SIV nucleocapsid proteinsand cross-species HIV-1 genomic RNA recognition. Retrovirology. 13, 89, doi: 10.1186/s12977-016-0322-5.
  20. Rye-McCurdy, T., Olson, E.D., Liu, S., Binkley, C., Reyes, J.P., Thompson B.R., Flanagan,J.M., Parent, L.J., Musier-Forsyth, K. (2016) Functional equivalence of retroviral MA domains infacilitating Psi RNA binding specificity by Gag. Viruses. 8(9), 256, doi:10.3390/v8090256.
  21. Long, Y., Abad, M.G., Olson, E.D., Carrillo, E., Jackman, J.E. (2016) Identification of distinctbiological functions for four 3′-5′ RNA polymerases. Nucleic Acids Res. 44(17), 8395-406, doi:10.1093/nar/gkw681.
  22. Kwon H*, Phan HD*, Xu WJ, Ko YJ, Park S. (2016) Application of a smartphone metabolomicsplatform to the authentication of Schisandra sinensis, Phytochemical Analysis, 2016 May,10.1002/pca.2617
  23. Raper, Austin T., Suo, Z. (2016) Investigation of Intradomain Motions of a Y-Family DNAPolymerase during Substrate Binding and Catalysis. Biochemistry 55(41):5832-5844. DOI:10.1021/acs.biochem.6b00878
  24. Iyadurai, S., Arnold, W. D., Kissel, J. T., Ruhno, C., McGovern, V. L., Snyder, P. J., Prior, T. W.,Roggenbuck, J., Burghes, A. H. and Kolb, S. J. (2016), Variable phenotypic expression and onset in MYH14 distal HMN phenotype in a large, multigenerational North American family.Muscle Nerve. Accepted Author Manuscript. doi:10.1002/mus.25491
  25. Schneider, C. R.; Shafaat, H. S. An internal electron reservoir enhances catalytic CO2 reduction by a semisynthetic enzyme. Chem Commun 2016, 52 (64), 9889–9892.
  26. Fidai I.*, Wachnowsky C.*, Cowan J.A. Mapping cellular Fe-S cluster uptake and exchangereactions – divergent pathways for iron-sulfur cluster delivery to human ferredoxins.Metallomics. 8, 1283-1293. doi: 10.1039/C6MT00193A
  27. Wachnowsky C.*, Fidai I.*, Cowan J.A. Cytosolic iron-sulfur cluster transfer – a proposed kineticpathway for reconstitution of glutaredoxin 3. FEBS Lett. doi: 10.1002/1873-3468.12491
  28. Fidai I.*, Wachnowsky C.*, Cowan J.A. Glutathione complexed [2Fe-2S] clusters function in Fe-S cluster storage and trafficking. J. Biol. Inorg. Chem. 21, 887-901. doi: 10.1007/s00775-016-1387-2.
  29. Wachnowsky C.*, Fidai I.*, Cowan J.A. (2016) Iron-Sulfur Cluster Exchange Reactions Mediated by the Human Nfu Protein. J. Biol. Inorg. Chem. 21, 825-836. doi: 10.1007/s00775-016-1381-8
  30. Li, H. Duann, P. Lin, PH. Zhao, L. Fan, Z. Tan, T. Zhou, X. Sun, M. Sermersheiml, M.Ma, H. Steinberg, S. Zhu, H. Zeng, C. Guan, J. Ma, J (2016). MG53 Promotes Wound Healing and Reduces Scar Formation by Facilitating Cell Membrane Repair and Controlling Myofibroblast Differentiation Biophysical Journal, 2016
  31. Elbaz, M., Ahirwar, D., Xiaoli, Z., Zhou, X., Lustberg, M., Nasser, M., Shilo, K., & Ganju,R. (2016). TRPV2 is a novel biomarker and therapeutic target in triple negative breast cancer. Oncotarget, 5 doiI: 10.18632/oncotarget.9663
  32. Yao, Y., Zhang, B., Zhu, H., Li, H., Han, Y., Chen, K., …Zhou, X… Zeng, C. (2016). MG53 permeates through blood-brain barrier to protect ischemic brain injury.Oncotarget, 7(16), 22474–22485. doi:10.18632/oncotarget.7965
  33. Brittain MK, McGarry KG, Moyer RA, Babin MC, Jett DA, Platoff GE Jr, Yeung DT. Int J Toxicol. 2016 May;35(3):344-57. doi: 10.1177/1091581816638086

2015:

  1. Zahurancik, W. J., Baranovskiy, A. G., Tahirov, T. H., and Suo, Z. (2015) Comparison of the kinetic parameters of the truncated catalytic subunit and holoenzyme of human DNA polymerase varepsilon. DNA Repair (Amst) 29, 16-22
  2. Williams-Wagner, R. N., Grundy, F. J., Raina, M., Ibba, M., and Henkin, T. M. (2015) The Bacillus subtilis tyrZ gene encodes a highly selective tyrosyl-tRNA synthetase and is regulated by a MarR regulator and T box riboswitch. J Bacteriol 197, 1624-1631
  3. Slater, J. W., and Shafaat, H. S. (2015) Nickel-Substituted Rubredoxin as a Minimal Enzyme Model for Hydrogenase. J Phys Chem Lett 6, 3731-3736
  4. Sample, P. J., Koreny, L., Paris, Z., Gaston, K. W., Rubio, M. A., Fleming, I. M., Hinger, S., Horakova, E., Limbach, P. A., Lukes, J., and Alfonzo, J. D. (2015) A common tRNA modification at an unusual location: the discovery of wyosine biosynthesis in mitochondria. Nucleic Acids Res 43, 4262-4273
  5. Sample, P. J., Gaston, K. W., Alfonzo, J. D., and Limbach, P. A. (2015) RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids. Nucleic Acids Res 43, e64
  6. Rye-McCurdy, T., Rouzina, I., and Musier-Forsyth, K. (2015) Fluorescence anisotropy-based salt-titration approach to characterize protein-nucleic acid interactions. Methods Mol Biol 1259, 385-402
  7. Rajkovic, A., Erickson, S., Witzky, A., Branson, O. E., Seo, J., Gafken, P. R., Frietas, M. A., Whitelegge, J. P., Faull, K. F., Navarre, W., Darwin, A. J., and Ibba, M. (2015) Cyclic Rhamnosylated Elongation Factor P Establishes Antibiotic Resistance in Pseudomonas aeruginosa. MBio 6, e00823
  8. Pan, X., Yan, J., Patel, A., Wysocki, V. H., and Bell, C. E. (2015) Mutant poisoning demonstrates a nonsequential mechanism for digestion of double-stranded DNA by lambda exonuclease trimers. Biochemistry 54, 942-951
  9. McGinnis, J. L., Liu, Q., Lavender, C. A., Devaraj, A., McClory, S. P., Fredrick, K., and Weeks, K. M. (2015) In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state. Proc Natl Acad Sci U S A 112, 2425-2430
  10. Long, Y., and Jackman, J. E. (2015) In vitro substrate specificities of 3′-5′ polymerases correlate with biological outcomes of tRNA 5′-editing reactions. FEBS Lett 589, 2124-2130
  11. Liu, Q., and Fredrick, K. (2015) Roles of helix H69 of 23S rRNA in translation initiation. Proc Natl Acad Sci U S A 112, 11559-11564
  12. Howard, C. J., Yu, R. R., Gardner, M. L., Shimko, J. C., and Ottesen, J. J. (2015) Chemical and biological tools for the preparation of modified histone proteins. Top Curr Chem 363, 193-226
  13. Heisler, D. B., Kudryashova, E., Grinevich, D. O., Suarez, C., Winkelman, J. D., Birukov, K. G., Kotha, S. R., Parinandi, N. L., Vavylonis, D., Kovar, D. R., and Kudryashov, D. S. (2015) ACTIN-DIRECTED TOXIN. ACD toxin-produced actin oligomers poison formin-controlled actin polymerization. Science 349, 535-539
  14. Fredrick, K. (2015) Another look at mutations in ribosomal protein S4 lends strong support to the domain closure model. J Bacteriol 197, 1014-1016
  15. Brehove, M., Wang, T., North, J., Luo, Y., Dreher, S. J., Shimko, J. C., Ottesen, J. J., Luger, K., and Poirier, M. G. (2015) Histone core phosphorylation regulates DNA accessibility. J Biol Chem 290, 22612-22621
  16. Bernier, M., Luo, Y., Nwokelo, K. C., Goodwin, M., Dreher, S. J., Zhang, P., Parthun, M. R., Fondufe-Mittendorf, Y., Ottesen, J. J., and Poirier, M. G. (2015) Linker histone H1 and H3K56 acetylation are antagonistic regulators of nucleosome dynamics. Nat Commun 6, 10152

2014

  1. Zhang, J., Pan, X., and Bell, C. E. (2014) Crystal structure of lambda exonuclease in complex with DNA and Ca(2+). Biochemistry 53, 7415-7425
  2. Zahurancik, W. J., Klein, S. J., and Suo, Z. (2014) Significant contribution of the 3′–>5′ exonuclease activity to the high fidelity of nucleotide incorporation catalyzed by human DNA polymerase. Nucleic Acids Res 42, 13853-13860
  3. Vyas, R., Zahurancik, W. J., and Suo, Z. (2014) Structural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda. Proc Natl Acad Sci U S A 111, E3033-3042
  4. Taggart, D. J., Dayeh, D. M., Fredrickson, S. W., and Suo, Z. (2014) N-terminal domains of human DNA polymerase lambda promote primer realignment during translesion DNA synthesis. DNA Repair (Amst) 22, 41-52
  5. Smith, B. A., and Jackman, J. E. (2014) Saccharomyces cerevisiae Thg1 uses 5′-pyrophosphate removal to control addition of nucleotides to tRNA(His.). Biochemistry 53, 1380-1391
  6. Rye-McCurdy, T. D., Nadaraia-Hoke, S., Gudleski-O’Regan, N., Flanagan, J. M., Parent, L. J., and Musier-Forsyth, K. (2014) Mechanistic differences between nucleic acid chaperone activities of the Gag proteins of Rous sarcoma virus and human immunodeficiency virus type 1 are attributed to the MA domain. J Virol 88, 7852-7861
  7. Raina, M., Moghal, A., Kano, A., Jerums, M., Schnier, P. D., Luo, S., Deshpande, R., Bondarenko, P. V., Lin, H., and Ibba, M. (2014) Reduced amino acid specificity of mammalian tyrosyl-tRNA synthetase is associated with elevated mistranslation of Tyr codons. J Biol Chem 289, 17780-17790
  8. Raina, M., and Ibba, M. (2014) tRNAs as regulators of biological processes. Front Genet 5, 171
  9. Qi, W., Li, J., and Cowan, J. A. (2014) A structural model for glutathione-complexed iron-sulfur cluster as a substrate for ABCB7-type transporters. Chem Commun (Camb) 50, 3795-3798
  10. North, J. A., Simon, M., Ferdinand, M. B., Shoffner, M. A., Picking, J. W., Howard, C. J., Mooney, A. M., van Noort, J., Poirier, M. G., and Ottesen, J. J. (2014) Histone H3 phosphorylation near the nucleosome dyad alters chromatin structure. Nucleic Acids Res 42, 4922-4933
  11. Moghal, A., Mohler, K., and Ibba, M. (2014) Mistranslation of the genetic code. FEBS Lett 588, 4305-4310
  12. Kudryashova, E., Heisler, D., Zywiec, A., and Kudryashov, D. S. (2014) Thermodynamic properties of the effector domains of MARTX toxins suggest their unfolding for translocation across the host membrane. Molecular Microbiology
  13. Kobayashi, K., Katz, A., Rajkovic, A., Ishii, R., Branson, O. E., Freitas, M. A., Ishitani, R., Ibba, M., and Nureki, O. (2014) The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation. Nucleic Acids Res 42, 12295-12305
  14. Katz, A., Solden, L., Zou, S. B., Navarre, W. W., and Ibba, M. (2014) Molecular evolution of protein-RNA mimicry as a mechanism for translational control. Nucleic Acids Res 42, 3261-3271
  15. Helm, M., and Alfonzo, J. D. (2014) Posttranscriptional RNA Modifications: playing metabolic games in a cell’s chemical Legoland. Chem Biol 21, 174-185
  16. Hariharan, S., Kelm, R. J., Jr., and Strauch, A. R. (2014) The Puralpha/Purbeta single-strand DNA-binding proteins attenuate smooth-muscle actin gene transactivation in myofibroblasts. J Cell Physiol 229, 1256-1271
  17. Govindaraju, S., and Lee, B. S. (2014) Kruppel -like factor 8 is a stress-responsive transcription factor that regulates expression of HuR. Cell Physiol Biochem 34, 519-532
  18. Govindaraghavan, M., McGuire Anglin, S. L., Shen, K. F., Shukla, N., De Souza, C. P., and Osmani, S. A. (2014) Identification of interphase functions for the NIMA kinase involving microtubules and the ESCRT pathway. PLoS Genet 10, e1004248
  19. Gillis, D., Krishnamohan, A., Yaacov, B., Shaag, A., Jackman, J. E., and Elpeleg, O. (2014) TRMT10A dysfunction is associated with abnormalities in glucose homeostasis, short stature and microcephaly. J Med Genet 51, 581-586
  20. Gadkari, V. V., Tokarsky, E. J., Malik, C. K., Basu, A. K., and Suo, Z. (2014) Mechanistic investigation of the bypass of a bulky aromatic DNA adduct catalyzed by a Y-family DNA polymerase. DNA Repair (Amst) 21, 65-77
  21. Fredrick, K., and Ibba, M. (2014) The ABCs of the ribosome. Nat Struct Mol Biol 21, 115-116
  22. Fidai, I., Hocharoen, L., Bradford, S., Wachnowsky, C., and Cowan, J. A. (2014) Inactivation of sortase A mediated by metal ATCUN complexes. J Biol Inorg Chem 19, 1327-1339
  23. Dewan, V., Reader, J., and Forsyth, K. M. (2014) Role of aminoacyl-tRNA synthetases in infectious diseases and targets for therapeutic development. Top Curr Chem 344, 293-329
  24. Das, M., Vargas-Rodriguez, O., Goto, Y., Suga, H., and Musier-Forsyth, K. (2014) Distinct tRNA recognition strategies used by a homologous family of editing domains prevent mistranslation. Nucleic Acids Res 42, 3943-3953
  25. Dare, K., Shepherd, J., Roy, H., Seveau, S., and Ibba, M. (2014) LysPGS formation in Listeria monocytogenes has broad roles in maintaining membrane integrity beyond antimicrobial peptide resistance. Virulence 5, 534-546
  26. Betat, H., Long, Y., Jackman, J. E., and Morl, M. (2014) From end to end: tRNA editing at 5′- and 3′-terminal positions. Int J Mol Sci 15, 23975-23998
  27. Balakrishnan, R., Oman, K., Shoji, S., Bundschuh, R., and Fredrick, K. (2014) The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli. Nucleic Acids Res 42, 13370-13383
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