Publications

Selected list of recent publications. Bold names indicate members of the lab.

Mc Cartney, A.M., Anderson, J., Liggins, L., Hudson, M.L., Anderson, M.Z., TeAika, B., Geary, J., Cook-Deegan, R., Patel, H.R. and Phillippy, A.M., 2022. Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life. Proceedings of the National Academy of Sciences 119(4), (2022). https://doi.org/10.1073/pnas.2115860119

Mishra, A., Forche, A., Anderson, M.Z. Parasexuality of Candida Species. Frontiers in Cellular and Infection Microbiology 11, 1236 (2021). https://doi.org/10.3389/fcimb.2021.796929

Wang, J.M.*, Woodruff, A.L.*, Dunn, M.J., Fillinger, R.J., Bennett, R.J., Anderson, M.Z. Intraspecies transcriptional profiling reveals key regulators of Candida albicans pathogenic traits. mBio 12(2), e00586-21 (2021). https://doi.org/10.1128/mBio.00586-21

Serrano, J., Smith, K.R., Crouch, A.L., Sharma, V., Yi, F., Vargova, V., LaMoia, T.E., Dupont, L.M., Serna, V., Tang, F., Gomes-Dias, L., Blakeslee, J.J., Hatzakis, E., Peterson, S.N., Anderson, M.Z., Pratley, R.E., Kyriazis, G.A. High-dose saccharin supplementation does not induce gut microbiota changes or glucose intolerance in healthy humans and mice. Microbiome 9(11), 1-18 (2021). https://doi.org/10.1186/s40168-020-00976-w

Dunn, M.J.*, Fillinger, R.J.*, Anderson, L.M., Anderson, M.Z.. Automated quantification of Candida albicans biofilm-related phenotypes reveals additive contributions to biofilm production. npj Biofilms and Microbiomes volume 6, Article number: 36 (2020). https://doi.org/10.1038/s41522-020-00149-5.

Dunn, M.J. and Anderson, M.Z.. To Repeat or Not to Repeat: Repetitive Sequences Regulate Genome Stability in Candida albicans. Genes 2019, 10, 866. https://doi.org/10.3390/genes10110866

Anderson, M.Z., Thomson, G.J., Hirakawa, M.P. et al. A ‘parameiosis’ drives depolyploidization and homologous recombination in Candida albicans. Nat Commun 10, 4388 (2019) doi:10.1038/s41467-019-12376-2

Ene, I., Bennett, R.J., Anderson, M.Z.. Mechanisms of genome evolution in Candida albicans. (2019). Current Opinion in Microbiology. https://doi.org/10.1016/j.mib.2019.05.001

Fillinger, R.J., Anderson, M.Z.. Seasons of change: Mechanisms of genome evolution in human fungal pathogens. (2019). Infection, Genetics and Evolution. doi.org/10.1016/j.meegid.2019.02.031

Liang, S., Anderson, M.Z., Hirakawa, M.P., Wang, J., Frazer, C., Alaalm, L.M., Thomson, G.J., Ene, I., Bennett, R.J. (2019). Hemizygosity Enables a Mutational Transition Governing Fungal Virulence and Commensalism. Cell Host & Microbe. doi.org/10.1016/j.chom.2019.01.005

Moran, G.P., Anderson, M.Z., Myers, L.C. et al. Curr Genet (2019). doi.org/10.1007/s00294-019-00932-8

Monsey L., Best L.G., Zhu J., DeCroo S., Anderson M.Z. (2019) The association of mannose binding lectin genotype and immune response to Chlamydia pneumoniae: The Strong Heart Study. PLoS ONE 14(1): e0210640.

Dunn, M.J., Woodruff, A.L., and Anderson, M.Z.. Galleria mellonella waxworm infection model for disseminated candidiasis. 2018. J. Vis. Exp. (141), e58914, doi:10.3791/58914.

Wang, J.A., Bennett, R.J., and Anderson, M.Z.. The Genome of the Human Pathogen Candida albicans Is Shaped by Mutation and Cryptic Sexual Recombination. mBio 9:e01205-18.

Uppuluri, P., Liu, N.N., Anderson, M.Z., Dunn, M.J., Berman, J., Lopez-Ribot, J.L., and Koehler, J.. 2018. Candida albicans Dispersed Cells Are Developmentally Distinct from Biofilm and Planktonic Cells. mBio. 9: e01338-18.

Claw, K.G., Anderson, M.Z., Begay, R.L., Tsosie, K.S., Fox, K., Garrison, N.A., the SING Consortium. 2018. Shifting the Research Paradigm: Indigenous Genomics and Health. Nat Comm. 9: 2957. PMID: 30054469.

Dunn, M.J., Kinney, G.M., Washington, P.M., Berman, J., Anderson, M.Z.. Functional diversification accompanies gene family expansion of MED2 homologs in Candida albicans. PLoS Genet 14(4): e1007326.

Scaduto, C.M., Kabrawala, S., Scheving, W., Ly, A., Anderson, M.Z., Whiteway, M., and Bennett, R.J.. Epigenetic control of pheromone MAPK signaling determines sexual fecundity in Candida albicans. PNAS. Dec 2017, 114 (52) 13780-13785; PMID: 29255038.

Kenny, A., Dowdle, J.A., Bozzacco, L., McMichael, T.M., St Gelais, C., Panfil, A.R., Sun, Y., Anderson, M.Z., Green, P.L., Lopez, C.B., Rosenberg, B.R., Wu, L., and Yount, J.S. 2017. Human genetic determinants of viral diseases. Annual Rev Genetics. 51: 241-263. PMID 28853921.

Anderson, M.Z., Saha, A., Haseeb, A., and Bennett, R.J. 2017. A chromosome 4 trisomy contributes to increased fluconazole resistance in a clinincal isolate of Candida albicans. Microbiology. 163: e000478. PMID 28640746.

Anderson, M.Z., Porman, A.P., Wang, N., Huang, D., Cuomo, C., and Bennett, R.J. 2016. A multistate toggle switch defines fungal cell fates and is regulated by synergistic genetic cues. PLoS Genetics. 12: e1006353.

Anderson, M.Z. and Bennett, R.J. 2016. Budding off: Bringing functional genomics to Candida albicans. Briefings in Functional Genomics. 15: 85-94.

Anderson, M.Z., Wigen, L., Burrack, L.S., and Berman, J. 2015. Real-time evolution of a subtelomeric gene family in Candida albicans. Genetics. 200: 907-19.

Hirakawa, M.P., Martinez, D.A.*, Sakthikumar, S.*, Anderson, M.Z., Berlin, A., Gujja, S., Zeng, Q., Zisson, E., Wang, J.A., Greenberg, J.A., Berman, J., Bennett, R.J., and Cuomo, C.A. 2015. Genetic and phenotypic intra-species variation in Candida albicans. Genome Research. 25: 413-25.

Haran, J., Boyle, H., Hokamp, K., Yeomans, T., Liu, Z., Church, M., Fleming, A., Anderson, M.Z., Berman, J., Myers, L.C., Sullivan, D.J., and Moran G. 2014. Telomeric ORFs (TLOs) in Candida spp. encode Mediator subunits that regulate distinct virulence traits. PLoS Genetics. 10: e1004658.

Anderson, M.Z., Gerstein, A.C., Wigen, L., Baller, J.A., and Berman, J. 2014. Silencing is noisy: Population and cell level noise in telomere-adjacent genes is dependent on telomere position and Sir2. PLoS Genetics. 10: e1004436.

Anderson, M.Z., Baller, J.A., Dulmage, K., Wigen, L., and Berman, J. 2012. The three clades of the telomere-associated TLO gene family of Candida albicans have different splicing, localization and expression features. Eukaryot Cell. 11: 1268-75.