Naegleria 18S rRNA Sequence References

Amaral-Zettler,L.A., Zettler,E.R., Theroux,S.M., Palacios,C., Aguilera,A. and Amils,R.  2011. Microbial community structure across the tree of life in the extreme Rio Tinto. ISME J 5 (1), 42-50.
Acc # FN860173, FN860554, FN862490, FN863141, FN863645, FN864428, FN864858, FN865795, FN866074

Anchierri, J., Lecareux, V., Pernin, P. and Pelandakis, M.  2009.  Analysis of Naegleria sp. using rDNA new fragment. Unpublished.
Acc # AM062739, AM062726 – AM062741, AM071385

Baker, B.J., Tyson, G.W., Goosherst, L. and Banfield, J.F.  2009.  Insights into the diversity of eukaryotes in acid mine drainage biofilm communities.  Appl. Environ. Microbiol. 75 (7), 2192-2199.
Acc # DQ423743

Baquero,R.A., Reyes-Batlle,M., Nicola,G.G., Martin-Navarro,C.M., Lopez-Arencibia,A., Guillermo Esteban,J., Valladares,B., Martinez-Carretero,E., Pinero,J.E. and Lorenzo-Morales,J. 2014. Presence of potentially pathogenic free-living amoebae strains from well water samples in Guinea-Bissau. Pathogens and Global Health 108: 206-211.
Acc # KJ000395 – KJ000398

Clark, C.G. and Cross, G.A.  1988.  Small-subunit ribosomal RNA sequence from Naegleria gruberi supports the polyphyletic origin of amoebas. Mol. Biol. Evol. 5: 512-518.
Acc # M18732

Conza, L., Pagani, S.C., Gaia, V. 2013. Presence of Legionella and Free-Living Amoebae in Composts and Bioaerosols from Composting Facilities. PLOS ONE  8: e68244  
Acc # KC164218, KC164220, KC164221, KC164228, KC164236, KC164238, KC164247, KC210140, KC210141

Conza L, Casati Pagani S, Gaia V. 2013. Influence of climate and geography on the occurrence of Legionella and amoebae in composting facilities. BMC Res Notes. 2014 Nov 24;7:831.
Acc # KC346962, KC346963

Corsaro,D., Feroldi,V., Saucedo,G., Ribas,F., Loret,J.F. and Greub,G. 2009. Novel Chlamydiales strains isolated from a water treatment plant. Environ. Microbiol. 11 (1), 188-200.
Acc # EU377592 – EU377597

Corsaro, D., Feroldi, V., Loret, J.-F., Ribas, F. and Greub, G.  2010.  Biodiversity of amoebae-resisting bacteria in a water-treatment plant.  Unpublished.
Acc # EU377590 – EU377591, FJ628000 – FJ628001

De Jonckheere,J.F.  1994.  Comparisonof partial SSUrDNA sequences suggests revisions of species names in the genus Naegleria.  Eur. J. Protist. 30: 333-341.
(14 sequences not submitted to databases, but with detailed sequences presented in paper).

De Jonckheere,J.F.  1997.  The phylogenetic position of the amoeboflagellate Willaertia deduced from SSUrDNA sequences. Eur. J. Protist. 33, 72-76.
Acc # X93224

De Jonckheere, J.F. and Brown, S.  1999.  SSUrDNA analysis reveals the existence of a second Naegleria sp. with dividing flagellates: N. robinsoni sp. nov.  Eur. J. Protist. 35, 264-266.
Acc # AJ237786

De Jonckheere, J.F., Brown, S., Dobson, P.J., Robinson, B.S. and Pernin, P.  2001. The amoeba-to-flagellate transformation test is not reliable for the diagnosis of the genus Naegleria. Description of three new Naegleria spp.  Protist. 152(2):115-21.
Acc # AJ243440 – AJ243442

De Jonckheere, J.F. and Brown, S.  2004.  Defining new Naegleria spp. using ribosomal DNA sequences. Acta Protozool. 36, 273-278.
Acc # Y10184 – Y10189

Dykova, I., Kyselova, I., Peckova, H., Obornik, M. and Lukes, J.  2001.  Identity of Naegleria strains isolated from organs of freshwater fishes.  Dis. Aquat. Org. 46 (2), 115-121.
Acc # AF338417 – AF338423

Dykova, I., Peckova, H., Fiala, I. and Dvorakova, H.  2006.  Fish-isolated Naegleria strains and their phylogeny inferred from ITS and SSU rDNA sequences. Folia Parasitol. 53 (3), 172-180.
Acc # DQ768714 – DQ768725

Dykova, I., Kostka, M., Wortberg, F., Nardy, E. and Peckova, H.  2010.  New data on aetiology of nodular gill disease in rainbow trout, Oncorhynchus mykiss. Folia Parasitol. 57 (3), 157-163.
Acc # HM363629

Dykova, I. and Kostka, M.  2015.  Illustrated Guide to Culture Collection of Free-living Amoebae. Unpublished.
Acc # JQ271691 – JQ271705

Einvik, C., Decatur, W.A., Embley, T.M., Vogt, V.M., and Johansen, S.  1997.  Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing.  RNA. 3(7): 710–720.
Acc # U80058 – U80062

Garcia, A., Goni, P., Clavel, A., Lobez, S., Fernandez, M.T. and Ormad, M.P. 2011. Potentially pathogenic free-living amoebae (FLA) isolated in Spanish wastewater treatment plants. Environ Microbiol Rep 3 (5), 622-626.
Acc # HQ007042

Gast, R.J., Moran, D.M., Dennett, M.R., Wurtsbaugh, W. and Amaral-Zettler, L. 2011.  Amoebae and Legionella pneumophila in coastal saline environments. Journal of Water and Health 9:  37-52.
Acc # GU320579, GU320598

Gianinazzi,C., Schild,M., Wuthrich,F., Ben Nouir,N., Fuchslin,H.P., Schurch,N., Gottstein,B. and Muller,N. 2009. Screening Swiss water bodies for potentially pathogenic free-living amoebae. Res. Microbiol. 160 (6), 367-374.  
Acc # FJ940707, FJ940715, FJ940717, FJ940719, FJ948856

Greub, G., Drancourt, M. and Raoult, D.  2004.  Broad-range PCR targeting the 18S rRNA gene for the identification of protists isolated from hospital water network.  Unpublished.
Acc # AY266314

Hirst,M.B., Kita,K.N. and Dawson,S.C.  2011.  Uncultivated Microbial Eukaryotic Diversity: A Method to Link ssu  rRNA Gene Sequences with Morphology.  PLoS ONE 6 (12), E28158.  
Acc # JN635477, JN635484, JN635485, JN635486, JN635490

Izumiyama, S., Yagita, K., Furushima-Shimogawara, R., Asakura, T., Karasudani, T. and Endo, T.  2003.  Occurrence and distribution of Naegleria species in thermal waters in Japan. J Eukaryot Microbiol. 50 Suppl:514-5.
Acc # AY321362

Liang,S.-Y., Ji,D.-R., Hsia,K.-T., Hung,C.-C., Sheng,W.-H., Hsu,B.-M., Chen,J.-S., Wu,M.-H., Lai,C.-H. and Ji,D.-D. 2010. Isolation and identification of Acanthamoeba species related to amebic encephalitis and non-pathogenic free-living amoeba species from the rice field. Journal of Applied Microbiology 109 : 1422–1429.
Acc # FJ710514

Maruyama, S. and Nozaki, H.  2007. Sequence and intranuclear location of the extrachromosomal rDNA plasmid of the amoebo-flagellate Naegleria gruberi. J. Eukaryot. Microbiol. 54 (4), 333-337.
Acc # AB298288

Murase, J., Hida,A., Ogawa,K., Nonoyama,T., Yoshikawa,N. and Imai,K.  2014.  Impact of long-term fertilizer treatment on microeukaryotic community structure in rice field soil.
Unpublished.
Acc # AB970461

Silberman, J.D., Roger, A.J., Nerad, T.A., Gunderson, J.H. and Sogin,M.L.  1999.  Phylogenetic diversity of the Heteroloboseans (amoebae-flagellates) as revealed by nuclear 16S-like gene analyses. Unpublished
Acc # AF011457

Thomas,V., Loret,J.F., Jousset,M. and Greub,G. 2008. Biodiversity of amoebae and amoebae-resisting bacteria in a drinking water treatment plant. Environ Microbiol. 10: 2728-45.
Acc # EU273836 – EU273838

Walochnik, J., Hassl, A., Simon, K., Benyr, G. and Aspock, H.  1999.  Isolation and identification by partial sequencing of the 18S ribosomal gene of free-living amoebae from necrotic tissue of Basilliscus plumifrons (Sauria: Iguanidae).  Parasitol. Res. 85 (7), 601-603.
Acc # AF114439

Walochnik, J., Muller, K.-D., Aspock, H. and Michel, R.  2005.  An Endocytobiont Harbouring Naegleria Strain Identified as N. clarki De Jonckheere, 1994.  Acta Protozool. 44, 301-310.  
Acc # KC527832

Wildschutte, H., Wolfe, D.M., Tamewitz, A. and Lawrence, J.G.  2004. Protozoan predation, diversifying selection, and the evolution of antigenic diversity in Salmonella. Proc. Natl. Acad. Sci. U.S.A. 101 (29), 10644-10649.
Acc # AY576362, AY576366, AY576367

Wildschutte, H. and Lawrence, J.G.  2007.  Differential Salmonella survival against communities of intestinal amoebae.  Microbiology (Reading, Engl.) 153 (PT 6), 1781-1789.
Acc # EF378676 – EF378680

Xinyao, L., Miao, S., Yonghong, L., Yin, G., Zhongkai, Z., Donghui, W., Weizhong, W. and Chencai, A.  2006.  Feeding characteristics of an amoeba (Lobosea: Naegleria) grazing upon cyanobacteria: food selection, ingestion and digestion progress.  Microb. Ecol. 51 (3), 315-325.
Acc # AY496006

Zhou, L., Sriram, R., Visvesvara, G.S. and Xiao, L.  2003.  Genetic variations in the internal transcribed spacer and mitochondrial small subunit rRNA gene of Naegleria spp.  J Eukaryot Microbiol. 50 Suppl:522-6.
Acc # AY376148 – AY376151

Zirnstein, I. 2012.  Eukaryotic life in biofilms formed in a uranium mine. Unpublished.
Acc # JN982032

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